Locus 2261

Sequence ID 2L_DroMel_CAF1
Location 6,154,116 – 6,154,236
Length 120
Max. P 0.606780
window3626

overview

Window 6

Location 6,154,116 – 6,154,236
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.22
Mean single sequence MFE -24.42
Consensus MFE -15.38
Energy contribution -15.83
Covariance contribution 0.45
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.63
SVM decision value 0.15
SVM RNA-class probability 0.606780
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6154116 120 + 22407834
GUUGAUAUAUUACUGAACGAAAUUUCUUUUCCAGUUGGCUAGAAUCAAUGGGGACUGAAUGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAGUGCCAAUAAACAAGGAACA
.(((((...((((((..(((...(((..((((.(((((......))))).))))..)))((.(....).))....)))..))))))...)))))......((.((.........)).)). ( -26.50)
>DroSim_CAF1 2 97 + 1
--------------------UAUUUCUUUUCCUGUUGGCUAAUAUCAAUG---ACUACUCGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAUUGCCAAUAAACAAGGAACA
--------------------...((((((...(((((((.........((---(((....(.(....).)...(((..(...)..)))))))).........)))))))...)))))).. ( -22.87)
>DroYak_CAF1 3 98 + 1
---------------------AUUUCUUUUUCAGUUGGCUAGAAUCAAUGG-GACCCAAUGUUGAAAGGAAAAGCUUGCACAGUGGGCGGUUGAAAAUCAGUGCCAAUAAACAAGGAACA
---------------------..((((((....((((((..((.(((((.(-..((((.(((...(((......)))..))).))))).)))))...))...))))))....)))))).. ( -23.90)
>consensus
_____________________AUUUCUUUUCCAGUUGGCUAGAAUCAAUGG_GACUAAAUGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAGUGCCAAUAAACAAGGAACA
.......................((((((....((((((.............((((......(....).....(((..(...)..)))))))..........))))))....)))))).. (-15.38 = -15.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:22 2006