Locus 226

Sequence ID 2L_DroMel_CAF1
Location 635,235 – 635,341
Length 106
Max. P 0.901135
window360

overview

Window 0

Location 635,235 – 635,341
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -38.71
Consensus MFE -31.96
Energy contribution -32.80
Covariance contribution 0.84
Combinations/Pair 1.03
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 1.02
SVM RNA-class probability 0.901135
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 635235 106 + 22407834
AAAUUGAUUCUGCUUAACUUUGUGGCACAGCGGGUAGCGCUCCUUGGGCUACUUGUUCGCCUCCUCUUUCGUGCCCGCAUGAGCCGCA-AGCAGCGGCCACAGUUGC
.(((((...(((((....((((((((.(((((((((.((......((((.........)))).......))))))))).)).))))))-)).)))))...))))).. ( -38.52)
>DroSec_CAF1 24048 106 + 1
AAAUUGAUUCUGCUUAAGUUUGUGGCACAGCGUGUAGCGCUCCUUGGGCUACUUGUUCGCCUCCUCCUUCGUGCCCGCAUGAGCCGCA-AGCAGCGGCAACAGUUGC
.(((((...(((((...(((((((((...(((.(((((.(.....).))))).....)))........(((((....)))))))))))-))))))))...))))).. ( -38.70)
>DroSim_CAF1 23918 106 + 1
AAAUUGAUUCUGCUUAAGUUUGUGGCACAGCGGGUAGCGCUCCUUGGGCUACUUGUUCGCCUCCUCCUUCGUGCCCGCAUGAGCCGCA-AGCAGCGGCAACAGUUGC
.(((((...(((((...(((((((((.(((((((((.((......((((.........)))).......))))))))).)).))))))-))))))))...))))).. ( -42.02)
>DroEre_CAF1 28367 107 + 1
AAAUUGAUUCUGCUUAACUUUGUGGCACAGCGGGUAGCGCUCCUUGGGCUACUUGUUCGCCUUCUCUUUCGUGCCCGCAUGCGCGGCGUUGCAACGGCAACAGUUGC
..............(((((..((.((.(((((((((.((......((((.........)))).......))))))))).)).)).))(((((....)))))))))). ( -34.72)
>DroYak_CAF1 27564 106 + 1
AAAUUGAUUCUGCUUAACUUUGUGGCACAGCGGGUAGCGCUCCUUGGGCUACUUGUUCGCCUCCUCUUUCGAGCCCGCAUGAGCCGCA-AGCAACGGCAGCAGUUGC
.....(((((((((....((((((((.(((((((((((.(.....).)))))..(((((..........))))))))).)).))))))-))....))))).)))).. ( -39.60)
>consensus
AAAUUGAUUCUGCUUAACUUUGUGGCACAGCGGGUAGCGCUCCUUGGGCUACUUGUUCGCCUCCUCUUUCGUGCCCGCAUGAGCCGCA_AGCAGCGGCAACAGUUGC
.(((((...(((((......((((((.(((((((((.((......((((.........)))).......))))))))).)).))))))....)))))...))))).. (-31.96 = -32.80 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:31 2006