Locus 2259

Sequence ID 2L_DroMel_CAF1
Location 6,138,867 – 6,138,981
Length 114
Max. P 0.634085
window3623

overview

Window 3

Location 6,138,867 – 6,138,981
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -24.81
Consensus MFE -12.83
Energy contribution -13.39
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -2.20
Structure conservation index 0.52
SVM decision value 0.21
SVM RNA-class probability 0.634085
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6138867 114 - 22407834
UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGUACAUAUGUAUGUACCACAUAUGUGCAAUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC
....(((((((((.................)))))((((.........(((((((((((.......))))))))))).(((........)))............)))))))).. ( -30.13)
>DroSec_CAF1 7708 110 - 1
UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGU----AUGUAUGUACCACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC
....(((((((((.................)))))((((...(((((((((----..((....)).))))))))).(((((........)))))..........)))))))).. ( -28.53)
>DroSim_CAF1 7886 110 - 1
UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCUGGCUUACACAUAUGU----AUGUAUGUACUACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC
....(((((((((.................))))).(((...(((((((((----(.((....)))))))))))).(((((........)))))..........))).)))).. ( -29.23)
>DroEre_CAF1 9735 93 - 1
UUGCGCGUGCUGGUUAUACAACUGCCCCCUCCCCCU-----CCA-------------GCAUGU---ACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCCGCACUC
.((..((((((((.......................-----)))-------------))))).---.))...(((((((((........)))))..............)))).. ( -19.33)
>DroYak_CAF1 8251 88 - 1
UUGCGCGUGCUGGUUAUACAACGGCCCACUCCAC-----------------------GUAUGU---ACAUAUGUGCAUUCGGAAAAUAAUGAAUUAUUUAAAAUGUCUGCACUC
.((..((((((((.................))).-----------------------))))).---.))...(((((..((..((((((....))))))....))..))))).. ( -16.83)
>consensus
UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGU____AUGUAUGUAC_ACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC
.((((((((((((.................)))))......................(((((.....)))))))))(((((........)))))..............)))... (-12.83 = -13.39 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:19 2006