Locus 2253

Sequence ID 2L_DroMel_CAF1
Location 6,136,124 – 6,136,241
Length 117
Max. P 0.769223
window3613

overview

Window 3

Location 6,136,124 – 6,136,241
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.62
Mean single sequence MFE -31.88
Consensus MFE -23.38
Energy contribution -24.06
Covariance contribution 0.68
Combinations/Pair 1.12
Mean z-score -2.11
Structure conservation index 0.73
SVM decision value 0.52
SVM RNA-class probability 0.769223
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6136124 117 - 22407834
UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACAUCCCCAUUUUUUCCAGGGGUAAGGGUCUAUGGCAAUAGCUACCUA---CCUAUCUAUGGGGCUAGCACACAAAUCAC
..........(((.((((((((((((((((((((...((.....((((..........))))....))...)))))...)))......---((.......))))).)))).)))))))). ( -32.50)
>DroSec_CAF1 4738 120 - 1
UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUGCAGGGGUAAGGGUCUAUGGCAAUGGCUACCUACCACCUAUCUAUGGGGCUGGCACACAAAUCAC
..........(((.(((((((((((((.((((((...((.....((((..........))))....))...)))))).))))......((.((.......))))..)))).)))))))). ( -34.50)
>DroSim_CAF1 4799 120 - 1
UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUGCAGGGGUAAGGGUCUAUGGCAAUGGCUACCUACCACCUAUCUAUGGGGCUGGCACACAAAUCAC
..........(((.(((((((((((((.((((((...((.....((((..........))))....))...)))))).))))......((.((.......))))..)))).)))))))). ( -34.50)
>DroEre_CAF1 5060 109 - 1
UUUACUAUCAUGACUUUGUUGCUGCUGCUGUCAUUUUCCAACUUCC---UUU-UUCCAGGGGUAAGGGUCUACAGCAAUAGCUAC-------CUAUCUAUGGGGCUGGCACACAAAUCAC
..........(((.(((((((((..((((((.....(((...((((---(..-....)))))...)))...))))))..((((.(-------(.......)))))))))).)))))))). ( -26.30)
>DroYak_CAF1 5061 110 - 1
UUUACUAUCAUGACUUUGUUGCUGGCGCUGUCAUUUUCCAACUUCC---UUUAUGCCAGGGGUAAGGGUCUAUGGCAAUAGCUAC-------CUAUCUAUGGGGCUGGCGCACAAAUCAC
..........(((.((((((((..((((((((((...((....(((---((......)))))....))...)))))...)))..(-------(((....))))))..))).)))))))). ( -31.60)
>consensus
UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUCCAGGGGUAAGGGUCUAUGGCAAUAGCUACCUA___CCUAUCUAUGGGGCUGGCACACAAAUCAC
..........(((.((((((((((((.(((((((...((.....((((..........))))....))...))))))((((.((.........)).))))).))).)))).)))))))). (-23.38 = -24.06 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006