Locus 2251

Sequence ID 2L_DroMel_CAF1
Location 6,134,430 – 6,134,546
Length 116
Max. P 0.896122
window3610

overview

Window 0

Location 6,134,430 – 6,134,546
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.41
Mean single sequence MFE -20.92
Consensus MFE -20.40
Energy contribution -20.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.98
SVM decision value 0.99
SVM RNA-class probability 0.896122
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6134430 116 - 22407834
GCGCCCGCGGCCCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
(.(((...))).)..........----.....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.00)
>DroSec_CAF1 3095 116 - 1
GCGCCCGCGGCUCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAGCAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
(.(((...))).)..........----.....((((((....((((((((((((...(((((..(((((.....)))))...))))).....))))..(....).)))))))).)))))) ( -20.70)
>DroSim_CAF1 3105 116 - 1
GCGCCCGCGGCUCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
(.(((...))).)..........----.....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.50)
>DroEre_CAF1 3165 120 - 1
GCGCCCACGGCUCAGAAAAAUAACUGAAAAACGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
..(((...)))((((........)))).....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -22.80)
>DroYak_CAF1 3272 116 - 1
GCGCCCACGGCUCAGAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
(.(((...))).).(((......----..)))((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.60)
>consensus
GCGCCCGCGGCUCGUAAAAAUAA____ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC
(.(((...))).)...................((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) (-20.40 = -20.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:06 2006