Locus 2250

Sequence ID 2L_DroMel_CAF1
Location 6,133,951 – 6,134,071
Length 120
Max. P 0.750292
window3609

overview

Window 9

Location 6,133,951 – 6,134,071
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.08
Mean single sequence MFE -25.18
Consensus MFE -20.80
Energy contribution -20.80
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.83
SVM decision value 0.47
SVM RNA-class probability 0.750292
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6133951 120 + 22407834
UAGUACUCAUACUCAUUUGUACACAUCCAUAUUCUAGGUACAUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCA
..((((............))))..............((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... ( -23.10)
>DroSec_CAF1 2641 117 + 1
UAGUG---GUACUCAUUUGGACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCACAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCCUGCCAUCCG
..(((---(((......((((....)))).....(((((.(......))))))..(((((..((((((((((((....))).)))))))))....)))))...........))))))... ( -25.60)
>DroSim_CAF1 2645 117 + 1
UAGUG---GUACUCAUUUGGACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCG
..(((---(((......((((....)))).....(((((.(......))))))..(((((..((((((((((((....))).)))))))))....)))))...........))))))... ( -25.40)
>DroEre_CAF1 2711 117 + 1
UAGUG---GCACUCAUUUGUGCACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCGUCCG
..(((---((((......)))).)))..........((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... ( -27.40)
>DroYak_CAF1 2803 117 + 1
UAGUG---GUACUCAUUUGUACACAUCCAUGUUCUAGGUACUUGCAUGACCUGCAGUCGCAUUAAUUUAUAGUAAAAAUGCAUGUAAAUUACCUCGUGCCGAUAUUUUUCAUGCCAUCCG
..(((---((((......)))).)))..........((.....((((((......(((((((((((((((((((....))).)))))))))....))).)))).....))))))...)). ( -24.40)
>consensus
UAGUG___GUACUCAUUUGUACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCG
........((((......))))..............((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... (-20.80 = -20.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:05 2006