| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 634,789 – 634,881 |
| Length | 92 |
| Max. P | 0.612639 |
| Location | 634,789 – 634,881 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.36 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.37 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 634789 92 - 22407834 -----G------AAACAGAGGCUCCAAAUGAAGG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----.------...(((...((((.......))-)).....(((((.......))))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroVir_CAF1 32780 92 - 1 GCCACA------AAACUGCAGC-CGAAAUGAAAG-AAGAAAAGUUUCAGAUAAAUGAGCCGAA-UGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAUAA------------------ ((....------....(((.((-((((((.....-.......)))))..........(((((.-....)))))....))))))........))........------------------ ( -16.29) >DroPse_CAF1 36927 107 - 1 -----G------AAACAGAGGC-CCAAAUGAACGAAGGAAAAGUUCAAGAUAAAUGAACGGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAAAAACCCAACACACAUUCAU -----.------.......(((-.....(((((.........))))).............((((((...((.(....).))))))))....)))......................... ( -17.30) >DroSec_CAF1 23607 92 - 1 -----G------AAACAGAGGCUCCAAAUGAACG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----.------...(((..((((....(((((.-.......)))))........)))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroSim_CAF1 23471 98 - 1 -----GAAACAGAAACAGAGGCUCCAAAUGAACG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----..........(((..((((....(((((.-.......)))))........)))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroYak_CAF1 27128 92 - 1 -----G------AAACAGAGGCUCCAAAUGAAGG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAAUAA---------------U -----.------...(((...((((.......))-)).....(((((.......))))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >consensus _____G______AAACAGAGGCUCCAAAUGAACG_AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA_______________U ...................(((....................(((((.......))))).((((((...((.(....).))))))))....)))......................... (-15.14 = -15.37 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:30 2006