Locus 2248

Sequence ID 2L_DroMel_CAF1
Location 6,132,849 – 6,132,960
Length 111
Max. P 0.617273
window3605

overview

Window 5

Location 6,132,849 – 6,132,960
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.96
Mean single sequence MFE -29.30
Consensus MFE -24.83
Energy contribution -24.63
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.17
SVM RNA-class probability 0.617273
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6132849 111 + 22407834
ACCCACUUUCUACCCCC---------GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGAUGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
....((((((.....((---------((((((((((((((((((..........))))....((.......)))))))))......))))).))))((((...))))))))))....... ( -25.20)
>DroSec_CAF1 1564 112 + 1
ACCCACUUUCCGCCCCC--------GGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
..((......(((((..--------...((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) ( -29.80)
>DroSim_CAF1 1561 112 + 1
ACCCACUUUCCGCCCCC--------GGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
..((......(((((..--------...((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) ( -29.80)
>DroEre_CAF1 1623 111 + 1
ACCCAUUUUCUGCCCCC---------GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
..((..((((.((((..---------..((((((((((((((((..........))))....((.......)))))))))......)))))...))))))))(((((....).)))).)) ( -29.70)
>DroYak_CAF1 1665 120 + 1
ACCCACUUUCUGCCCCCUUGCCCCCUGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
....((((((.((....((((((.....((((((((((((((((..........))))....((.......)))))))))......)))))...)))))).....))))))))....... ( -32.00)
>consensus
ACCCACUUUCUGCCCCC_________GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG
..((......(((((.............((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) (-24.83 = -24.63 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006