Locus 2244

Sequence ID 2L_DroMel_CAF1
Location 6,127,630 – 6,127,720
Length 90
Max. P 0.923350
window3600

overview

Window 0

Location 6,127,630 – 6,127,720
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.09
Mean single sequence MFE -26.34
Consensus MFE -22.60
Energy contribution -22.28
Covariance contribution -0.32
Combinations/Pair 1.25
Mean z-score -1.84
Structure conservation index 0.86
SVM decision value 1.15
SVM RNA-class probability 0.923350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6127630 90 - 22407834
UUAAAAUGGAAAUGCACU--UUAAAAACCGUUGGCAAGCGGCCAGCUUAUUUUUGCGCUAUCCUCGCACGGUCACACUGUGCUUGAGCGGUA
(((((.((......)).)--))))..(((((((((.....))))))..........(((......((((((.....))))))...)))))). ( -24.80)
>DroSec_CAF1 45986 90 - 1
UUUAAAUGAAAAUACACU--UUAAAAACCGUUGGCAAGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCGGUA
.......(((((((((((--.......(((((....)))))..))))))))))).(((((.....(((((((...)))))))..)))))... ( -29.10)
>DroSim_CAF1 45794 90 - 1
UUUAAAUGAAAAUACACU--UUUAAAACCGUUGGCAAGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCGGUA
.......(((((((((((--.......(((((....)))))..))))))))))).(((((.....(((((((...)))))))..)))))... ( -29.10)
>DroEre_CAF1 54724 92 - 1
UUAAAAUGGGACUACACUCUUUCAAAAUCGUUGGCAAGCGGAAAGUGUAUAUUUGCGCUCUCCUCGCACGGUCACACUGAGUUUGAGCGGUA
......((..(........)..))..(((((...((((((((.((((((....)))))).))).....(((.....))).))))).))))). ( -22.10)
>DroYak_CAF1 55620 92 - 1
UUAAAAUGAAAUUAAACUCUUAAAAAUUCGUUGGCAAGUGGACAGUGCAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCGGCA
.............................((((.((((.(((.((((((....)))))).))).)((((((.....)))))))))..)))). ( -26.60)
>consensus
UUAAAAUGAAAAUACACU__UUAAAAACCGUUGGCAAGCGGACAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCGGUA
..........................((((((.(...(.(((.((((((....)))))).))).)(((((((...))))))).).)))))). (-22.60 = -22.28 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:56 2006