Locus 2240

Sequence ID 2L_DroMel_CAF1
Location 6,116,400 – 6,116,494
Length 94
Max. P 0.997855
window3595

overview

Window 5

Location 6,116,400 – 6,116,494
Length 94
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 69.06
Mean single sequence MFE -20.47
Consensus MFE -13.49
Energy contribution -15.17
Covariance contribution 1.68
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 2.95
SVM RNA-class probability 0.997855
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6116400 94 + 22407834
GAAUCCUUUGUAUCUUAUGGAUUUGGUCGGAAAUACUUUUCAUUUUUGCAACAUUCUUUUUGACGGCGCUUAAUGAAUUGCUUCGGUAGUUCGU--------------
((((((............)))))).((((((((....)))).............((.....)))))).....(((((((((....)))))))))-------------- ( -20.80)
>DroSec_CAF1 34547 104 + 1
AACCCCUUUGUAUCUUAUGAAUUUGGUCGAAUAUGUUUUGCGUUUUCGCAGCAUUCUUUUUGACAG--CUUAAUGAAUUGCAUCUUUAGUUCCGUAUAUUAUAUU--U
........((((...((((......((((((.((((..((((....))))))))....))))))..--......((((((......))))))))))...))))..--. ( -17.10)
>DroSim_CAF1 34955 95 + 1
-----------UUCUUAUGGAUGUGGUCGAAAAUACUUUGCGUUUUCGCAACAUUCUUUUUGACAG--CUUAAUGAAUUGCUUCGGUAAUUUCAAAUAUUCUAUGUAU
-----------....((((((.((.((((((((....(((((....))))).....)))))))).)--)....((((((((....)))).)))).....))))))... ( -23.50)
>consensus
_A__CCUUUGUAUCUUAUGGAUUUGGUCGAAAAUACUUUGCGUUUUCGCAACAUUCUUUUUGACAG__CUUAAUGAAUUGCUUCGGUAGUUCCA_AUAUU_UAU___U
.........................((((((((....(((((....))))).....))))))))..........(((((((....)))))))................ (-13.49 = -15.17 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006