| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 633,374 – 633,472 |
| Length | 98 |
| Max. P | 0.552067 |
| Location | 633,374 – 633,472 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 91.42 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -15.29 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 633374 98 + 22407834 AUUUCUGAUAUUUGCAACCUGAAAAUAUCAAAACUAUCUCAU---AUAAAUAUAUAACUUUUUCCAGAGAUUACGCAUUUUCUUUCAGUGCUUUGAGCUUU .....((((((((.(.....).)))))))).......((((.---............(((......))).....(((((.......)))))..)))).... ( -11.50) >DroSec_CAF1 22231 101 + 1 AUUUUCGAUGUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... ( -16.90) >DroSim_CAF1 22061 101 + 1 AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAGGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((...............(((.....))).......((((((.....))))))..)))).... ( -18.30) >consensus AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... (-15.29 = -15.30 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:29 2006