| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,092,114 – 6,092,219 |
| Length | 105 |
| Max. P | 0.559686 |
| Location | 6,092,114 – 6,092,219 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.63 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -16.60 |
| Energy contribution | -17.77 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6092114 105 + 22407834 AAUGAUACAAAAUCUUGGGCACCCAAACAAAUUUGGAUUAAGGAUGUUCUCAAGAAAUCGGGCACGGAACUGCUCGAUAUAUCCAAGAGUCCCGCAAAGGCUGUU ..............((((....))))........(((((..((((((((....)))((((((((......)))))))).)))))...))))).((....)).... ( -25.10) >DroVir_CAF1 24779 103 + 1 AGUGAGAAAAAGACUUGGGGUACCAAGCAAAAUUGGUUUAAGGAUGCGCUGAACAAAUCCGGCACGGAACUACUCGAUGUAUCCAAAACUAAGGCUAAAGCAG-- .((.((.....(.(((((....))))))....(((((((..((((((((((........)))).(((......)))..)))))).)))))))..))...))..-- ( -26.20) >DroGri_CAF1 19210 103 + 1 AAUGAGAAAAAGACUUGGACAACCAAGCCAAAUUGGAUAAAGGAUGCACUCAACAAGUCGGGCACGGAAUUGGUGGAUAUAUCCAAGACCAAAACUAAAGCAG-- ...........(.(((((....))))).)...(((((((....((.(((.(((....(((....)))..)))))).)).))))))).................-- ( -19.80) >DroSec_CAF1 10899 105 + 1 AAUGAUACAAAAUCUUGGGCUCCCAAACAAAUUUGGAUUAAGGAUGUUCUCAAGAAAUCGGGCACGGAGCUGCUCGAUAUAUCCAAGAGUCCGUCAAAGGCUGUU ................(((((((((((....))))).....((((((((....)))((((((((......)))))))).)))))..))))))((.....)).... ( -28.80) >DroSim_CAF1 11234 105 + 1 AAUGAUACAAAAUCUUGGGCUCCCAAACAAAUUUGGAUUAAGGAUGUUCUCAAGAAAUCGGGCACGGAGCUGCUCGAUAUAUCCAAAAGUCCGGCAAAGGCUGUU ................(((((.(((((....))))).....((((((((....)))((((((((......)))))))).)))))...)))))(((....)))... ( -27.00) >DroYak_CAF1 18447 105 + 1 AAUGAUACGAAAUCUUGGGCUCCCAAACAAAUUUGGAUCAAGGAUGUUCUCAAGAAGUCGGGCACUGAAUUGCUCGAUAUAUCCAAGAGUCCAUCCAAGGCUGUU ...............((((((((((((....))))).....((((((((....)))((((((((......)))))))).)))))..)))))))............ ( -29.70) >consensus AAUGAUACAAAAUCUUGGGCUCCCAAACAAAUUUGGAUUAAGGAUGUUCUCAAGAAAUCGGGCACGGAACUGCUCGAUAUAUCCAAGAGUCCGGCAAAGGCUGUU ...............(((((..((((......)))).....((((((.........((((((((......))))))))))))))....)))))............ (-16.60 = -17.77 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:48 2006