Locus 2235

Sequence ID 2L_DroMel_CAF1
Location 6,080,116 – 6,080,212
Length 96
Max. P 0.579249
window3590

overview

Window 0

Location 6,080,116 – 6,080,212
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 99.31
Mean single sequence MFE -19.33
Consensus MFE -18.07
Energy contribution -18.07
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.93
SVM decision value 0.09
SVM RNA-class probability 0.579249
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6080116 96 - 22407834
CAGAGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA
....(((((((....((....))..)))))))(((((..(((((......(((((((.(((.....))))))))))......))))).)))))... ( -18.20)
>DroSec_CAF1 41846 96 - 1
CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA
...((((((((....((....))..))))))))((((..(((((......(((((((.(((.....))))))))))......))))).)))).... ( -19.90)
>DroSim_CAF1 42495 96 - 1
CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA
...((((((((....((....))..))))))))((((..(((((......(((((((.(((.....))))))))))......))))).)))).... ( -19.90)
>consensus
CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA
....(((((((....((....))..)))))))(((((..(((((......(((((((.(((.....))))))))))......))))).)))))... (-18.07 = -18.07 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:46 2006