Locus 2233

Sequence ID 2L_DroMel_CAF1
Location 6,075,496 – 6,075,593
Length 97
Max. P 0.949063
window3587

overview

Window 7

Location 6,075,496 – 6,075,593
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 85.35
Mean single sequence MFE -17.93
Consensus MFE -17.30
Energy contribution -17.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.96
SVM decision value 1.39
SVM RNA-class probability 0.949063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6075496 97 + 22407834
GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUAUUCCCCUUCCCAUUCCCCUUCCCAAUCCCCUUC
(((.((....))..........((.((......(((((((......))))))).)).)).....))).............................. ( -17.40)
>DroSec_CAF1 37234 79 + 1
GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU------------------UCCAAAUCCCCUUC
((((((....))..........((.((......(((((((......))))))).)).))....))------------------))............ ( -18.20)
>DroSim_CAF1 37886 79 + 1
GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU------------------UCCAAAUCCCCUUC
((((((....))..........((.((......(((((((......))))))).)).))....))------------------))............ ( -18.20)
>consensus
GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU__________________UCCAAAUCCCCUUC
....((....))..........((.((......(((((((......))))))).)).))...................................... (-17.30 = -17.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006