Locus 2230

Sequence ID 2L_DroMel_CAF1
Location 6,065,927 – 6,066,023
Length 96
Max. P 0.587364
window3584

overview

Window 4

Location 6,065,927 – 6,066,023
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -23.73
Consensus MFE -17.02
Energy contribution -17.58
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.72
SVM decision value 0.11
SVM RNA-class probability 0.587364
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6065927 96 + 22407834
CCAACGGAACAGCUGUUGCAAGAACUCGACCACUCUCACUCGCUUGGUUAUCGAUAUCAGGCAAAUGUUAUCGAAAAGCAAGUGGUCUUGCAAUCA
..(((((.....)))))((((((....((......))..(((((((.((.((((((.((......)).)))))).)).)))))))))))))..... ( -27.80)
>DroSec_CAF1 27666 96 + 1
CCAACGGAACAGCUGUUGCAAAAACUCGAACACUCUCACUCGCUUGGCUAUCGAUAUUAGGCAAGUGUUAUCGAAAAGCCAGUGGUCAUGCAAUCA
..(((((.....)))))(((.......((......))..(((((.((((.((((((............))))))..)))))))))...)))..... ( -20.40)
>DroSim_CAF1 28258 96 + 1
CCAACGGAACAGCUGUUGCAAAAACUCGAACACUCUCACUCGCUUGGCUAUCGAUAUUAGGCAAGUGUUAUCGAAAAGCCAGUGGUCAUGCAAUCA
..(((((.....)))))(((.......((......))..(((((.((((.((((((............))))))..)))))))))...)))..... ( -20.40)
>DroEre_CAF1 29078 96 + 1
CCAACGGAACAGCUGUUGCCAAAACUCGACCACUCUCACUGGAUUCGGUAUCGAUAUCAGAUAAUUGUUAUCGAAAAACAAGUGGUCAUGCAAUCA
.((((((.....)))))).........(((((((...((((....)))).((((((.(((....))).))))))......)))))))......... ( -24.60)
>DroYak_CAF1 29007 96 + 1
CCAACGGAACAGCUGUUGCAAAAACUCGACCACUCUUACUCGCUUCGAUAUCGAUAUCAGCUUAUUGUUAUCGAAAAACAAGUGGUCAUAAAAUCA
.((((((.....)))))).........(((((((.........(((((((.(((((......))))).))))))).....)))))))......... ( -25.44)
>consensus
CCAACGGAACAGCUGUUGCAAAAACUCGACCACUCUCACUCGCUUGGCUAUCGAUAUCAGGCAAGUGUUAUCGAAAAGCAAGUGGUCAUGCAAUCA
.((((((.....)))))).........(((((((.......((((.....((((((.((......)).)))))).)))).)))))))......... (-17.02 = -17.58 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:41 2006