Locus 223

Sequence ID 2L_DroMel_CAF1
Location 632,744 – 632,835
Length 91
Max. P 0.714099
window357

overview

Window 7

Location 632,744 – 632,835
Length 91
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.92
Mean single sequence MFE -15.91
Consensus MFE -10.06
Energy contribution -9.56
Covariance contribution -0.50
Combinations/Pair 1.33
Mean z-score -1.50
Structure conservation index 0.63
SVM decision value 0.38
SVM RNA-class probability 0.714099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 632744 91 - 22407834
ACAACUCU-----UCGGAGUUGUCA----------AAAAUACCAAGC---CACGAAAUAAAGAAUUGCGAAACUCCCAAAAAAAAAAAAAACAGCAGUCUCGGGGUCUG
(((((((.-----...)))))))..----------.......((..(---(.(((......((.((((.........................))))))))).))..)) ( -17.91)
>DroSec_CAF1 21610 85 - 1
ACAACUCU-----UGGGAGUUGUCA----------AAAAUACCAAGC---CACGAAAUAAAGAAUUGCGAAACUCCCAAAA------AACACAGCAGUCUCGUUGUCUG
.......(-----((((((((..((----------(...........---..............)))...)))))))))..------...(((((......)))))... ( -14.91)
>DroSim_CAF1 21439 85 - 1
ACAACUCU-----UCGGAGUUGUCA----------AAAAUACCAAGC---CACGAAAUAAAGAAUUGCGAAACUCCCAAAA------AACACAGCAGUCUCGUUGUCUG
(((((((.-----...)))))))..----------............---..........(((...((((.(((.(.....------......).))).))))..))). ( -17.00)
>DroEre_CAF1 25741 85 - 1
ACAACUCU-----UUGGAGUUGUCA----------AAAAUACCAAGC---CACGAAAUAAAGAAUUGCAAAACUCCCAAAA------AACACAGCAGUCUCGGUGUCUG
(((((((.-----...)))))))..----------...(((((....---..(........).(((((.............------......)))))...)))))... ( -12.81)
>DroYak_CAF1 24832 85 - 1
ACCACUCU-----UUGGAGUUGUCA----------AAAAUACCGAGC---CACGAAAUAAAGAAUUGCGAAACUCCCAAAA------AGCACAGCAGUCUCGGUGUCUG
((.((((.-----...)))).))..----------...((((((((.---.............(((((....((.......------))....)))))))))))))... ( -15.23)
>DroMoj_CAF1 18744 103 - 1
ACAACUGCAGUUGCGGCAGUUGUCAAGAGCAGUCAAAAAAUGCAACCAAAUACAAAUAAAAGAAUUGCCAAAUAACAAAAA------UAAUAAAUAAUAUUGAGCUCUG
((((((((.......))))))))..(((((...........((((...................)))).............------(((((.....))))).))))). ( -17.61)
>consensus
ACAACUCU_____UCGGAGUUGUCA__________AAAAUACCAAGC___CACGAAAUAAAGAAUUGCGAAACUCCCAAAA______AACACAGCAGUCUCGGUGUCUG
((((((((.......))))))))......................................(((((((.........................))))).))........ (-10.06 =  -9.56 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:28 2006