Locus 2225

Sequence ID 2L_DroMel_CAF1
Location 6,029,495 – 6,029,587
Length 92
Max. P 0.500000
window3573

overview

Window 3

Location 6,029,495 – 6,029,587
Length 92
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 77.39
Mean single sequence MFE -25.75
Consensus MFE -13.85
Energy contribution -14.47
Covariance contribution 0.62
Combinations/Pair 1.20
Mean z-score -1.93
Structure conservation index 0.54
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6029495 92 - 22407834
GCCAGCUGAAGAAUCUUGAAAGAUUCCACGGAAUUUGGUGGAAUUUUAUAUGAGAUUUUUUAU-------AUUGGAUUUCUAUGGAUUCUAGAUGGA-UU
.(((..((((((((((((.((((((((((........))))))))))...)))))))))))).-------.(((((.((.....)).))))).))).-.. ( -25.10)
>DroSec_CAF1 16143 99 - 1
ACCAGUGGCAGAAUCUUGUAGGAUUCCAGGCAAUAUGGUGGAAUUUUCUAUGGGAUUUAGCAUAGAGGAGAUAGGCUUUCUUUGGAUUCUAGAUGGA-UU
.(((...((.((((((..((((((((((..........)))))))..)))..)))))).)).((((((((......)))))))).........))).-.. ( -26.30)
>DroSim_CAF1 16414 99 - 1
ACCAGUGGCAGAAUCAUGUAGGAUUCCAGGCAAUAUGGUGGAAUUUUCUAUUGGAUUUAGCAACGAGGAGAUAGGCUUUCUUUGGAUUCUAGAUGGA-UU
.(((...((.(((((..(((((((((((..........)))))))..))))..))))).))..((((((((.....)))))))).........))).-.. ( -23.20)
>DroEre_CAF1 19555 100 - 1
ACGAGUUGCAGAAUCUUGAAGGAUUCCAGGCAUUUUGGUGGGAUUUCAUAUGGGAUUUAGCAUAGAAGAGAUGUGAUUCCUAGGAGAUCAAGCUGCAGUU
.((((.(((.((((((....))))))...))).))))((..((((((...(((((....((((.......))))...))))).))))))..))....... ( -28.40)
>consensus
ACCAGUGGCAGAAUCUUGAAGGAUUCCAGGCAAUAUGGUGGAAUUUUAUAUGGGAUUUAGCAUAGAGGAGAUAGGAUUUCUAUGGAUUCUAGAUGGA_UU
.......((.((((((((((((((((((..........)))))))..))))))))))).))....................................... (-13.85 = -14.47 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:30 2006