Locus 2222

Sequence ID 2L_DroMel_CAF1
Location 6,009,731 – 6,009,827
Length 96
Max. P 0.857022
window3570

overview

Window 0

Location 6,009,731 – 6,009,827
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 90.35
Mean single sequence MFE -33.31
Consensus MFE -27.00
Energy contribution -27.58
Covariance contribution 0.59
Combinations/Pair 1.12
Mean z-score -2.68
Structure conservation index 0.81
SVM decision value 0.81
SVM RNA-class probability 0.857022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6009731 96 - 22407834
GCUGCCGUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACACCGGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAACAACUACA
((((...(((.....))).))))(((((..((((........(((....))).(((((((.......))))))).))))..))))).......... ( -34.30)
>DroSec_CAF1 65775 96 - 1
GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACCCCAGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA
(((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... ( -32.00)
>DroSim_CAF1 66421 96 - 1
GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACCCCAGCCCAGGCCAUGUUGGUCACCAAUAUCAACAAGCUUCAGGAGCAGCAGCUGCA
(((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... ( -31.90)
>DroEre_CAF1 70567 96 - 1
GCUGCCCUGCAAGAAGCAACAGCGUUCCCAGAGCCUGACACCGGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA
((((((((....(((((..(((.((((...))))))).....(((....))).(((((((.......))))))).)))))))).)))))....... ( -35.30)
>DroYak_CAF1 70193 96 - 1
GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGUCUCACACCAGCGCAGGCCAUGUUGGUGAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA
((((((((....(((((....(((((................)))))......((((((((.....)))))))).)))))))).)))))....... ( -34.29)
>DroMoj_CAF1 91719 96 - 1
GCUGCCCUGCAAGAAGCAGCAACGCUCACAGAGCUUAACACCUGCCCAGGCGAUGGUGGUGUGCAACAUUAACAAGCAACAGGAGCAGCAGCAACA
(((((.((((.....))))....((((.....((((..(((((((....)))..))))(((.....)))....)))).....)))).))))).... ( -32.10)
>consensus
GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACACCAGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA
(((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... (-27.00 = -27.58 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:27 2006