Locus 2221

Sequence ID 2L_DroMel_CAF1
Location 6,004,890 – 6,004,993
Length 103
Max. P 0.843628
window3569

overview

Window 9

Location 6,004,890 – 6,004,993
Length 103
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 78.41
Mean single sequence MFE -26.18
Consensus MFE -13.46
Energy contribution -15.74
Covariance contribution 2.28
Combinations/Pair 1.07
Mean z-score -2.11
Structure conservation index 0.51
SVM decision value 0.76
SVM RNA-class probability 0.843628
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6004890 103 - 22407834
UACGGGGUA--UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAGUUUGAAGAGAUUA--UCUUGUAAUCUUAACAUAGAGAGAGAUUUU
(((((((((--....(((((((((((((((((.((.....)).))))))(((.....)------))..)))))))))))))--))))))).((((......))))........ ( -26.90)
>DroSec_CAF1 61039 105 - 1
UACGGGGUA--UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAAUUCGAAGAGAUUAUAUCUUGUAAUCAAUACAUAGAAAGAGAUUUU
(((((((((--((..((((((((...((((((.((.....)).))))))(((.....)------)).....)))))))))))))))))))....................... ( -26.20)
>DroSim_CAF1 61670 107 - 1
UACGGGGUAUAUAACGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAAUCCGAAGAGAUUAUAUCUUGUAAUCAAUACAUAGAGAAAGAUUUU
(((((((((((....((((((((..(((((((.((.....)).)))))))......((------....)).)))))))))))))))))))....................... ( -27.00)
>DroEre_CAF1 66144 99 - 1
UA-----------AGGUUACUUCGAAACCGGUUUCGGCCUGAUUUCGGUUCUACCUGAAAUUGUGAAAUUCGAAGAGAUUA--UCUUGUAAACUAUACAUAGAUA-AGAUUUU
.(-----------(((((.(((((((...(((....))).((((((((......))))))))......)))))))...(((--(((((((.....)))).)))))-))))))) ( -23.20)
>DroYak_CAF1 65336 100 - 1
UACGGUGUA--GAAGAUUACUUCGAAACCGGUUUCGGGAUGAUUUCGGUUCUACCUGAAGUUAAGAAAUUCGAAGGGAUAA--UCUUGUAAGCUAUUCAG---------UAUU
...(((.((--.((((((((((((((.(((....)))..(((((((((......))))))))).....)))))))...)))--)))).)).)))......---------.... ( -27.60)
>consensus
UACGGGGUA__UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA______GAAAUUCGAAGAGAUUA__UCUUGUAAUCUAUACAUAGAGA_AGAUUUU
(((((((........(((((((((((((((((.((.....)).))))))((.....))..........)))))))))))....)))))))....................... (-13.46 = -15.74 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:26 2006