Locus 2220

Sequence ID 2L_DroMel_CAF1
Location 5,994,999 – 5,995,105
Length 106
Max. P 0.593937
window3568

overview

Window 8

Location 5,994,999 – 5,995,105
Length 106
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -24.94
Consensus MFE -17.92
Energy contribution -17.67
Covariance contribution -0.25
Combinations/Pair 1.23
Mean z-score -1.07
Structure conservation index 0.72
SVM decision value 0.12
SVM RNA-class probability 0.593937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5994999 106 - 22407834
AAUGCUGCUUUGCGAUGGCUGCGACGACAGCUACCACACCUUUUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAAAUUCUUAUCAAAAAGU-UUCUAACA
.((((((.((...((.(((.((((((...((.............)).)))))).))))).)).)))))).......(((((.....))))).......-........ ( -22.62)
>DroVir_CAF1 75723 106 - 1
CAUGCUGCUCUGUGACGGUUGCGACGAUAGCUAUCAUACCUUCUGCUUGUUGCCACCACUGAGCAGCAUACCAAAAGGUGAGUUUCAUUUCGUCAAUA-UACUCACU
.(((((((((.((...(((.((((((..(((.............))))))))).))))).))))))))).......(((((((...............-.))))))) ( -35.01)
>DroPse_CAF1 78812 96 - 1
GAUGCUUCUGUGCGAUGGCUGCGACGACAGCUACCACACGUUCUGUCUGCUGCCGCCCUUGACCAGCAUACCCAAAGGUAAGA-------CAACAACC-CCCUA---
.........(((.(.((((((......)))))).).)))(((.(((((((((...........)))).((((....)))))))-------))..))).-.....--- ( -23.10)
>DroSec_CAF1 51107 103 - 1
UAUGCUGCUUUGCGAUGGCUGCGACGACAGCUACCACACCUUCUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAUAGUCUUUUCAAAAAUU-UCCUA---
..(((((.((...((.(((.((((((.(((............)))..)))))).))))).)).)))))((((....))))..................-.....--- ( -22.60)
>DroYak_CAF1 55281 104 - 1
UAUGCUGCUGUGCGAUGGCUGCGACGACAGCUACCACACCUUUUGCCUGUUGCCGCCUCUGACCAGUAUACCCAAAGGUAAUAUUCUAUACACUUAGUUUACUA---
(((((((..((.((..(((.((((((...((.............)).)))))).)))..)))))))))))......(((((....(((......))).))))).--- ( -23.22)
>DroPer_CAF1 78834 96 - 1
GAUGCUUCUGUGCGAUGGCUGCGACGACAGCUACCACACGUUCUGUCUGCUGCCGCCCUUGACCAGCAUACCCAAAGGUAAGA-------CAACAACC-CCCUA---
.........(((.(.((((((......)))))).).)))(((.(((((((((...........)))).((((....)))))))-------))..))).-.....--- ( -23.10)
>consensus
GAUGCUGCUGUGCGAUGGCUGCGACGACAGCUACCACACCUUCUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAGAUUCUUUUCAACAACU_UCCUA___
..(((((.....((..(((.((((((...((.............)).)))))).)))..))..)))))((((....))))........................... (-17.92 = -17.67 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:25 2006