| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 631,971 – 632,070 |
| Length | 99 |
| Max. P | 0.768304 |
| Location | 631,971 – 632,070 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.91 |
| Mean single sequence MFE | -38.82 |
| Consensus MFE | -21.83 |
| Energy contribution | -23.64 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 631971 99 + 22407834 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGA----------------AGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCCGUUGGCCAAUGGGCGU ..(((((((((((...((..-....))((((((((...---..))))----------------)))).))).))))))))..(.((((((((((.(-((.....)))))))))))))).. ( -35.50) >DroPse_CAF1 33408 119 + 1 CGUAAAGGUGCCAAGUGUAGAGGACUGGGCCUGGAGGGCCCCAUCAUAAGCCGCU-CAAUCUCAGCGAUUGUCGCUUUUAAACUCCCAUUGGCUCGGACCCACCUUUGGCCACUGGGCGU (((...(((((((((.((.(.((.(((((((.(((((((..........)))((.-(((((.....)))))..)).......))))....))))))).))))).))))).))))..))). ( -42.90) >DroSec_CAF1 20910 115 + 1 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGAGAUUCCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCCGUUGGCCAAUGGGCGU ....((((((((((......-..))))))))))((((.---(((....))))))).......(((((.....))))).....(.((((((((((.(-((.....)))))))))))))).. ( -38.60) >DroSim_CAF1 20660 115 + 1 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGAGAUUCCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCUUUGUCUUA-ACCGUCCGUUGGCCAAUGGGCGU ....((((((((((......-..))))))))))((((.---....(((.....)))......(((((.....)))))......)))).........-..((((((((....)))))))). ( -32.00) >DroEre_CAF1 24982 115 + 1 CGUAAAGGUGCGAAAACUUC-AAUUUGUGCUUUGGGGU---AUUCGAAGUACCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCGUUUGGCCAAUGGGCGU ....((((..((((......-..))))..))))(((((---((.....))))))).......(((((.....))))).....(.((((((((((.(-((....))).))))))))))).. ( -41.00) >DroPer_CAF1 34805 119 + 1 CGUAAAGGUGCCAAGUGUAGAGGACUGGGCCUGGAGGGCCCCAUCAUAAGCCGCU-CAAUCUCAGCGAUUGUCGCUUUUAAACUCCCAUUGGCUCGGACCCACCUUUGGCCACUGGGCGU (((...(((((((((.((.(.((.(((((((.(((((((..........)))((.-(((((.....)))))..)).......))))....))))))).))))).))))).))))..))). ( -42.90) >consensus CGUAAAGGUGCGAAAACAUC_CAUUUGCGCUUUGGGGU___AAUCGAAAUCCCCU_UAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA_ACCGUCCGUUGGCCAAUGGGCGU (.(.((((((((((.........)))))))))).).)..........................((((.....))))........((((((((((.............))))))))))... (-21.83 = -23.64 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:27 2006