Locus 2218

Sequence ID 2L_DroMel_CAF1
Location 5,983,996 – 5,984,115
Length 119
Max. P 0.735236
window3566

overview

Window 6

Location 5,983,996 – 5,984,115
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.93
Mean single sequence MFE -36.66
Consensus MFE -29.87
Energy contribution -28.85
Covariance contribution -1.02
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.81
SVM decision value 0.43
SVM RNA-class probability 0.735236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5983996 119 + 22407834
AAU-CUCCUCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGAGCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCA
...-......(((.(((..(((((....)))))..)))(((((((((.......))).)))))).))).((((((((((((((((((.......))))))....))))))))))..)).. ( -42.20)
>DroVir_CAF1 61299 118 + 1
GGUCAU--UUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUGCGCGAAUGUCAGGCUUUGAUCCUGGCACCAACUCGCGAAUUGGCCA
(((((.--((((((((.(((((((....))))).....((((((((.........)).))))))...)))).)))((((.(((((((.......))))))).....))))))).))))). ( -37.00)
>DroGri_CAF1 49563 120 + 1
GUUUGUUUGUUUUAGGUACUGGCAAAACUGCCACCUUUUCGAUUGCCAUCCUUCAGCAAAUCGAUACGGCCGUUCGUGAAUGCCAGGCUCUGAUCUUGGCCCCCACUCGCGAGUUGGCUA
(((.(((((((..(((...((((((.................)))))).)))..))))))).)))..((((..((((((.((...((((........))))..)).))))))...)))). ( -34.13)
>DroWil_CAF1 66290 117 + 1
UAU-A--UUUAACAGGUACUGGCAAAACUGCCACCUUCUCGAUUGCCAUUCUGCAGCAAAUCGACACGACAAGUCGCGAAUGUCAGGCUCUGAUUUUGGCACCAACUCGUGAAUUGGCCA
...-.--.......(((..(((((....))))).....((((((((.........)).))))))(((((...((.((.((.(((((...))))).)).))))....))))).....))). ( -28.50)
>DroMoj_CAF1 57771 119 + 1
GCU-AUCGCUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUACUUCAGCAAAUCGACACGUCCAUUCGCGAAUGCCAAGCUUUGAUCUUGGCACCCACUCGCGAGUUGGCCA
...-...(((.(.(((((.((((((.................)))))))))))))))..........(((.((((((((.(((((((.......))))))).....)))))))).))).. ( -35.83)
>DroAna_CAF1 41629 119 + 1
AUU-UACUUUCACAGGAACUGGCAAGACUGCCACCUUCUCGAUCGCCAUCCUUCAGCAGAUCGACACGUCCAUUCGCGAGUGCCAGGCUCUGAUCCUGGCCCCAACUCGCGAGCUGGCCA
...-..........(((..(((((....)))))..)))((((((((.........)).))))))...(.((((((((((((((((((.......))))))....))))))))).))).). ( -42.30)
>consensus
GAU_AUCUUUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAAUGCCAGGCUCUGAUCCUGGCACCAACUCGCGAGUUGGCCA
.............(((...(((((....))))))))..((((((((.........)).))))))...(.((((((((((..((((((.......))))))......))))))).))).). (-29.87 = -28.85 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:23 2006