Locus 2217

Sequence ID 2L_DroMel_CAF1
Location 5,983,613 – 5,983,703
Length 90
Max. P 0.750193
window3565

overview

Window 5

Location 5,983,613 – 5,983,703
Length 90
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 78.23
Mean single sequence MFE -15.92
Consensus MFE -1.02
Energy contribution -2.10
Covariance contribution 1.08
Combinations/Pair 1.29
Mean z-score -1.73
Structure conservation index 0.06
SVM decision value 0.47
SVM RNA-class probability 0.750193
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5983613 90 + 22407834
ACCUACAUUGCUCAUUCGGCACUAAUCCAUUUUGCAGGCUCUGCAAAAGAGGCUCUAUAUACAUAUUAAUAU--AGUUCAUUCUCA--ACUCCU
........((((.....))))........((((((((...))))))))((((..((((((........))))--)).....)))).--...... ( -15.60)
>DroSec_CAF1 39628 90 + 1
ACCUACAUUGCCCAUUCGGCAGUAAUCCAUUUUGCAGGCUAUGCGAAGCAGGCUCUAUAUACAUAUUUAUGU--GGUUCAUGCUCA--ACCAUU
......((((((.....)))))).......((((((.....))))))(((....(((((((......)))))--))....)))...--...... ( -20.10)
>DroSim_CAF1 40350 90 + 1
ACCUACAUUGGCCAUUCGGCAAUAAUCCAUUUUGCAGGCUAUGCGAAAGAAGCUCUAUCUACAUAUUUAUGU--AGUUCAUGCUCA--AUCCCU
..........(((....))).........(((((((.....)))))))((.((.....((((((....))))--)).....)))).--...... ( -19.00)
>DroEre_CAF1 44551 83 + 1
ACCUACAUGGCGAAUUCGUCACUAAUCCAUUUUGCA-------C--AGGAGGCC--AUAUACAAAUGAAUAUAGAGUUCAUCUACAAAACCCUU
......(((((((.....)).....(((........-------.--.))).)))--))......((((((.....))))))............. ( -10.60)
>DroYak_CAF1 43758 88 + 1
ACCUACAUCGCAAAUUCGGCACUAAUCCAUUUUGCAGGCUCUCC--AACAGGCCCUAUAUACAUAUUAAUGU--AGUUCAUCAACA--ACCCCU
..((((((.(((((...((.......))..))))).((((....--....))))..............))))--))..........--...... ( -14.30)
>consensus
ACCUACAUUGCCCAUUCGGCACUAAUCCAUUUUGCAGGCUAUGC_AAAGAGGCUCUAUAUACAUAUUAAUGU__AGUUCAUCCUCA__ACCCCU
.............................(((((((.....))))))).............................................. ( -1.02 =  -2.10 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:22 2006