Locus 2214

Sequence ID 2L_DroMel_CAF1
Location 5,977,335 – 5,977,430
Length 95
Max. P 0.758808
window3561 window3562

overview

Window 1

Location 5,977,335 – 5,977,430
Length 95
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 84.90
Mean single sequence MFE -33.98
Consensus MFE -25.00
Energy contribution -26.33
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.84
Structure conservation index 0.74
SVM decision value 0.50
SVM RNA-class probability 0.758808
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5977335 95 + 22407834
ACCACCCAUUUGAAAACAGUAGGCACCA--------UCGACGACGACUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUACCGGGGUGGAAACAGAGGGGUG-
..((((((((((.....(((.((((...--------(((....))).)))).)))......)))))((..(((((((.......))))))).))....)))))- ( -30.60)
>DroSec_CAF1 33395 95 + 1
ACCACCCAUUUGAAAACAGUUGGCACCA--------UCGACGACGACUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUCCCAGGGUGGAAACAGAGGGGUG-
..((((((((((.....((((((((...--------(((....))).))))))))......)))))((..(((((((.......))))))).))....)))))- ( -35.30)
>DroSim_CAF1 34093 95 + 1
ACCACCCAUUUGAAAACAGUUGGCACCA--------UCGACGACGACUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUACCAGGGUGGAAACAGAGGGGUG-
..((((((((((.....((((((((...--------(((....))).))))))))......)))))((..(((((((.......))))))).))....)))))- ( -35.30)
>DroEre_CAF1 38254 95 + 1
ACCACCCAUUUGAAAACAGUUGGCACCA--------UCGACGACGGCUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUGCCAGGGUGGAAAAGGAGGGGUG-
(((.((((((((.....((((((((((.--------((...)).)).))))))))......)))))).))(((((((.......)))))))........))).- ( -34.90)
>DroYak_CAF1 37474 95 + 1
ACCACCCAUUUGAAAACAGUUGGCACCA--------UCGACGACGACUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUUCCGGGGUGGAAAAGGAGGGGUG-
(((.((((((((.....((((((((...--------(((....))).))))))))......)))))).))(((((((.......)))))))........))).- ( -33.20)
>DroAna_CAF1 35399 96 + 1
ACCACCCAAUUGCAAACAGUUGGCAACAAAAUGCGGCCUCCGCCAACUGCCAACUCAUUAACAAAUGUGAGCCAGGA--------GGAGGAGGGUGAGAGGUGG
.((((((..(((((.....(((....)))..)))))(((((.((..(((....(((((........))))).)))..--------)).)))))....).))))) ( -34.60)
>consensus
ACCACCCAUUUGAAAACAGUUGGCACCA________UCGACGACGACUGCCAACUCAUUAGCAAAUGUGGUCCACUCGAUACCAGGGUGGAAACAGAGGGGUG_
..((((((((((.....((((((((......................))))))))......)))))....(((((((.......))))))).......))))). (-25.00 = -26.33 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 5,977,335 – 5,977,430
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.90
Mean single sequence MFE -32.93
Consensus MFE -23.94
Energy contribution -24.80
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.73
SVM decision value -0.04
SVM RNA-class probability 0.511225
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5977335 95 - 22407834
-CACCCCUCUGUUUCCACCCCGGUAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGUCGUCGUCGA--------UGGUGCCUACUGUUUUCAAAUGGGUGGU
-((((........(((((..((....)).)))))...((((((..(((.(((.((((.(((((...))--------))))))).))))))..)))))))))).. ( -29.50)
>DroSec_CAF1 33395 95 - 1
-CACCCCUCUGUUUCCACCCUGGGAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGUCGUCGUCGA--------UGGUGCCAACUGUUUUCAAAUGGGUGGU
-..((.(((...((((.....))))..))).))(((.((((((..(((.((((((((.(((((...))--------))))))))))))))..)))))))))... ( -34.70)
>DroSim_CAF1 34093 95 - 1
-CACCCCUCUGUUUCCACCCUGGUAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGUCGUCGUCGA--------UGGUGCCAACUGUUUUCAAAUGGGUGGU
-..((.(((.((..((.....)).)).))).))(((.((((((..(((.((((((((.(((((...))--------))))))))))))))..)))))))))... ( -32.50)
>DroEre_CAF1 38254 95 - 1
-CACCCCUCCUUUUCCACCCUGGCAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGCCGUCGUCGA--------UGGUGCCAACUGUUUUCAAAUGGGUGGU
-((((........(((((.(.......).)))))...((((((..(((.((((((((.(((((...))--------))))))))))))))..)))))))))).. ( -35.10)
>DroYak_CAF1 37474 95 - 1
-CACCCCUCCUUUUCCACCCCGGAAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGUCGUCGUCGA--------UGGUGCCAACUGUUUUCAAAUGGGUGGU
-..((.(((...((((.....))))..))).))(((.((((((..(((.((((((((.(((((...))--------))))))))))))))..)))))))))... ( -34.90)
>DroAna_CAF1 35399 96 - 1
CCACCUCUCACCCUCCUCC--------UCCUGGCUCACAUUUGUUAAUGAGUUGGCAGUUGGCGGAGGCCGCAUUUUGUUGCCAACUGUUUGCAAUUGGGUGGU
(((((............((--------....))....((.((((.(((.(((((((((...((((...))))......)))))))))))).)))).))))))). ( -30.90)
>consensus
_CACCCCUCUGUUUCCACCCUGGUAUCGAGUGGACCACAUUUGCUAAUGAGUUGGCAGUCGUCGUCGA________UGGUGCCAACUGUUUUCAAAUGGGUGGU
.((((........(((((.(.......).)))))...((((((..(((.((((((((.(..................).)))))))))))..)))))))))).. (-23.94 = -24.80 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:19 2006