| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,969,329 – 5,969,439 |
| Length | 110 |
| Max. P | 0.695004 |
| Location | 5,969,329 – 5,969,439 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.97 |
| Mean single sequence MFE | -43.98 |
| Consensus MFE | -37.40 |
| Energy contribution | -37.18 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5969329 110 + 22407834 GACCGGCGAUGUGGGCAGCUACGAUAUCAGUAAGCGCACCUUCAAGCGCCUGCUGGACUUGGAGGAAGGCCUGCCACUGCGUUUCGUGUCUUCCAUGUGCGCCGGACUAA ..(((((((((((((.((.(((((.((((((.((.((.((((((((..((....)).))))))))...))))...)))).)).))))).))))))))).))))))..... ( -46.70) >DroSec_CAF1 25306 110 + 1 GACCGGCGAUGUGGGCAGCUACGAUAUCAGCAAGCGCACCUUCAAGCGCCUGCUGGAUUUGGAGGAAGGCCUGCCACUGCGCUUCGUGUCCUCCAUGUGCGCCGGACUAA ..(((((((((((((..((.((((..((((((.((((........)))).))))))...((((((....))).))).......))))))..))))))).))))))..... ( -47.00) >DroSim_CAF1 25691 110 + 1 GACCGGCGAUGUGGGCAGCUACGAUGUCAGCAAGCGCACCUUCAAGCGCCUGCUGGACUUGGAGGAAGGCCUGCCACUGCGCUUCGUGUCCUCCAUGUGCGCCGGACUAA ..(((((((((((((..((.((((((....))((((((((((((((..((....)).))))))))..((....))..))))))))))))..))))))).))))))..... ( -49.00) >DroEre_CAF1 29972 110 + 1 GACCGGCGAUGUGGGCAGCUACGACAUCAGUAAGCGUACCUUCAAGCGCCUGCUGGACUUGGAGGAGGGCCUGCCGCUGCGCUUCCUGUCCUCCAUGUGCGCCGGGCUAA ..((((((((((.(.......).)))))((((.((((........)))).))))(.((.(((((((.((...((......))...)).))))))).)).))))))..... ( -46.20) >DroWil_CAF1 45270 110 + 1 UGCCGGCGAUGUGGGCUCCUAUGAUAUAAGCAAACGGAAUUUCAAAUAUUAUUUUGAUCUCGAGGAGGGUUUACCAUUGCGUUUCCUAUCGUCCAUGUGUGCCGGAUUUG ..((((((((((((((..................(((....(((((......)))))..)))((((((((........)).))))))...)))))))).))))))..... ( -30.70) >DroYak_CAF1 28919 110 + 1 AACUGGCGAUGUGGGCAGCUACGAUAUCAGCAAGCGCACCUUCAAGCGCCUGCUGGACUUACAGGACGGCCUGCCAUUGCGCUUCCUGUCCUCCAUGUGCGCCGGACUAA ..((((((((((((............((((((.((((........)))).))))))......(((((((...((......))...))))))))))))).))))))..... ( -44.30) >consensus GACCGGCGAUGUGGGCAGCUACGAUAUCAGCAAGCGCACCUUCAAGCGCCUGCUGGACUUGGAGGAAGGCCUGCCACUGCGCUUCCUGUCCUCCAUGUGCGCCGGACUAA ..(((((((((((((..(((........)))(((((((((((((((..((....)).))))))))..((....))..))))))).......))))))).))))))..... (-37.40 = -37.18 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:17 2006