Locus 2212

Sequence ID 2L_DroMel_CAF1
Location 5,967,062 – 5,967,155
Length 93
Max. P 0.765881
window3559

overview

Window 9

Location 5,967,062 – 5,967,155
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 75.86
Mean single sequence MFE -29.30
Consensus MFE -19.36
Energy contribution -19.34
Covariance contribution -0.02
Combinations/Pair 1.35
Mean z-score -1.34
Structure conservation index 0.66
SVM decision value 0.52
SVM RNA-class probability 0.765881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5967062 93 + 22407834
AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGUAAUCAUGAUGUUCAGCGGGUUGAGGAUUAAACGGAGGCAUAUGCUCCA--
.(((((((((......))))))....((((...........))))..)))((((.(((((....))))).))))...((((.(....))))).-- ( -29.30)
>DroPse_CAF1 41023 82 + 1
AUAACCCGCCUCCAAAGGCGGGAAACGAUGGAAAGGUAUGGGC--AAUCG----GUGCAGCUUGUUGUUGAU-------AGCCAGGUGCCACAGC
....(((((((....)))))))............(((((.(((--.((((----..((((....))))))))-------.)))..)))))..... ( -30.30)
>DroSim_CAF1 23452 93 + 1
AUGACCCGCCCUCAUAGGCGGGAAACACGGGAAAGUUGUGACCGAAAUCAUGAUGUUCAGCGGGUUGAGGGUUAAACGGAGGCAUAUGCUCCA--
.((((((((((.(.....(((....).)).(((.((..(((......)))..)).))).).))))...))))))...((((.(....))))).-- ( -29.60)
>DroEre_CAF1 27769 93 + 1
AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGGCAUCGUGGUGUACAGCGGGUUGAGGGUUUAACAGAGGCAUGUGCUCCA--
((((((((((......)))))).....(((...........)))...))))((.(((((((..(((((....)))))....)).))))).)).-- ( -29.80)
>DroYak_CAF1 26667 93 + 1
AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGGAAUCAUGGUGUACUGCGGGCUGAGGAUUUAACGGAGGCAUAUGCUCCA--
....((((((......)))))).....(((....((.(((((((......)))).))).))...)))..........((((.(....))))).-- ( -26.50)
>DroPer_CAF1 40792 82 + 1
AUAACCCGCCUCCAAAGGCGGGAAACGAUGGAAAGGUAUGGGC--AAUCG----GUGCAGCUUGUUGUUGAU-------AGCCAGGUGCCACAGC
....(((((((....)))))))............(((((.(((--.((((----..((((....))))))))-------.)))..)))))..... ( -30.30)
>consensus
AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCG_AAUCAUG_UGUACAGCGGGUUGAGGAUU_AACGGAGGCAUAUGCUCCA__
....((((((......))))))......(((.....((((.((........(((.(((((....))))).))).......))))))..))).... (-19.36 = -19.34 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:16 2006