| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,963,891 – 5,963,981 |
| Length | 90 |
| Max. P | 0.788078 |
| Location | 5,963,891 – 5,963,981 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.47 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -12.56 |
| Energy contribution | -13.62 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5963891 90 + 22407834 -GUGGGAAAUAGUUCGGGAAGUUUCUUGAAGAGUUUCAUCUGCUUGAAGGGAUCCAGAUCCUGCAGCUGCAGGCCGUUGCAGUUG--------------UUGGGC -....(((((..(((((((....)))))))..)))))....(((..(.(((((....))))).(((((((((....)))))))))--------------)..))) ( -29.90) >DroVir_CAF1 33552 103 + 1 AUUGCCCCACAGAUCGGGCAGCUUCUUGAACAGCUUCAUUUGUUUGAACGGAUCCAAAGACUGCAAUUGCAAUCCAUUGCAGUUAUUGUU-GUUGAUGGC-UGGA .((((((........)))))).........(((((((((((((....)))))..(((.(((((((((........))))))))).)))..-..))).)))-)).. ( -29.20) >DroPse_CAF1 36715 104 + 1 -UUGCCAAAUAGAUCGGGGAUCUUCUUGAACAAUUUCAUUUGCUUAAAGGGAUCCAGAUCCUGCAACUGCAGGCCAUUGCCAUUGCAAUUCGUUUGGGGUUGGAC -..........((((..((((((..((((.(((......))).))))..)))))).))))...(((((.(((((.(((((....)))))..))))).)))))... ( -34.30) >DroEre_CAF1 24582 90 + 1 -GUGGGAAACAGAUCGGGUAGUUUCUUGAAGAGCUUCAUCUGCUUGAAGGGAUCCAGAUCUUGCAGCUGCAGCCCGUUGCAGUUG--------------UUGGGC -...(((..(...((((((((.....((((....)))).))))))))..)..)))...(((.((((((((((....)))))))))--------------).))). ( -31.20) >DroYak_CAF1 23571 90 + 1 -GUGGGAAAUAGUUCGGGUAGCUUCUUGAAGAGCUUCAUCUGCUUGAAGGGAUCCAGAUCCUGCAGCUGCAGGCCAUUGCAGUUG--------------UUGGGC -...(((..(..(((((((((.....((((....)))).))))))))).)..)))...(((.((((((((((....)))))))))--------------).))). ( -30.80) >DroPer_CAF1 36457 104 + 1 -UUGCCAAAUAGAUCGGGGAUCUUCUUAAACAAUUUCAUUUGCUUAAAGGGAUCCAGAUCCUGCAACUGCAGGCCAUUGCCAUUGCAAUUCGUUUGCGGUUGGAC -..........((((..((((((..((((.(((......))).))))..)))))).))))...(((((((((((.(((((....)))))..)))))))))))... ( -38.00) >consensus _GUGCCAAAUAGAUCGGGGAGCUUCUUGAACAGCUUCAUCUGCUUGAAGGGAUCCAGAUCCUGCAACUGCAGGCCAUUGCAGUUG______________UUGGGC .............(((((......)))))....(((((......)))))((((....))))..(((((((((....))))))))).................... (-12.56 = -13.62 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:10 2006