Locus 2207

Sequence ID 2L_DroMel_CAF1
Location 5,958,311 – 5,958,407
Length 96
Max. P 0.993556
window3551

overview

Window 1

Location 5,958,311 – 5,958,407
Length 96
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 68.69
Mean single sequence MFE -20.23
Consensus MFE -10.05
Energy contribution -10.50
Covariance contribution 0.45
Combinations/Pair 1.31
Mean z-score -2.43
Structure conservation index 0.50
SVM decision value 2.41
SVM RNA-class probability 0.993556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5958311 96 + 22407834
-----------GACCUCCGAAGCCAGGACCUCCAAAACCAGGUCCUCCAAAACCAGGUCCACCAAACC--CGGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA
-----------(((((........(((((((........)))))))........))))).........--(((((.......((((((.....))))))...))))).. ( -21.89)
>DroSec_CAF1 14124 81 + 1
-----------GACCGCCGAAGCCAGGACCCCCAAAACCAGGUCCUCCGAAAC-----------------CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA
-----------............(((((............((((((.......-----------------.)))))).....((((((.....))))))...))))).. ( -17.90)
>DroSim_CAF1 14157 72 + 1
--------------------AGCCAGGACCUCCAAAACCAGGUCCUCCGAACC-----------------CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA
--------------------...(((((............((((((.......-----------------.)))))).....((((((.....))))))...))))).. ( -17.90)
>DroEre_CAF1 14024 81 + 1
-----------GACCUCCGAAUCCUGGACCUCCAAAGCCAGGUCCCCCGAAGC-----------------CAGGACCCCCAAAGUUGUUCUCCACGAUAACCUCCUGUA
-----------..............((((((........))))))........-----------------(((((........((((((......)))))).))))).. ( -14.80)
>DroMoj_CAF1 17214 101 + 1
UCCAAAUGCAGGCCUGCCAAACGACGGUCCGCCAAACGGUGGACCACCAAAGCCGCCUC------U--GCCCGGCAAACCAAAGUUAUUCUCCACAUUCACUUCCUGCA
......((((((.............((((((((....))))))))......((((....------.--...))))............................)))))) ( -31.10)
>DroAna_CAF1 13995 81 + 1
-----------GCCCUCCAAAACCUGGACCUCCAAAGCCAGGACCUCCGAAUC-----------------CUGGCCCUCCAAAGUUGUUCUCCACAACCACUUCCUGAA
-----------....((((.....))))........(((((((........))-----------------)))))........(((((.....)))))........... ( -17.80)
>consensus
___________GACCUCCGAAGCCAGGACCUCCAAAACCAGGUCCUCCGAAAC_________________CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA
.........................((((((........)))))).........................(((((........(((((.....)))))....))))).. (-10.05 = -10.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:09 2006