Locus 2206

Sequence ID 2L_DroMel_CAF1
Location 5,954,619 – 5,954,736
Length 117
Max. P 0.818244
window3550

overview

Window 0

Location 5,954,619 – 5,954,736
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.04
Mean single sequence MFE -41.93
Consensus MFE -18.09
Energy contribution -19.15
Covariance contribution 1.06
Combinations/Pair 1.47
Mean z-score -2.14
Structure conservation index 0.43
SVM decision value 0.67
SVM RNA-class probability 0.818244
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5954619 117 - 22407834
CCAUUUCCUGAGAUGUACAAAUGUGUCUCCGUGAUUAGGAGCAGGGAGGGUUCAAAGGAGCUCUUCUCCUGGUCACAGAUCCAUUGGCAGCUGGGAAUCAGGGAGCACAUCUUGACU
.(((((....)))))..((((((((.(((((((((((((((....((((((((....))))))))))))))))))).(((((...(....)..)).)))..))))))))).)))... ( -43.60)
>DroVir_CAF1 15899 117 - 1
CCAUUGCCGGCAAUAUGCAAUUGUGUGUCUGUGGUCAGCAGCGUGCAGAGCUCAAAACUGCGCUUCUCCGGAACACAUAUCCACUGGCAGCCGCUGAGCACGGCGCACAUCCUAAUC
..(((((.........)))))((((((.(((((.(((((.((((((((.........))))))......(((.......))).......)).))))).)))))))))))........ ( -40.90)
>DroGri_CAF1 10600 117 - 1
CCAUUGCCAGCAAUAUGCAAUUGUGUGUCCGUCGUGAGCAGUGUGCAGAGCUCAAAGCUACGCUUCUCCUGACCACAUGUCCACUGGCAGCCGCUCAGCAUGGCGCACAUCUUCAGU
..(((((.........)))))((((((.((((..(((((.(((..(((((....((((...)))))).)))..))).((((....))))...)))))..))))))))))........ ( -32.50)
>DroSim_CAF1 10360 117 - 1
CUAUUUCCUGAGAUGUACAAAUGUGAGUCCGUGAUUAGGAGCAGGGAGGGUUCAAAGGAGCUCUUCUCCUGGUCACAGAUACAUUGGCAGCUGGGAAUCAGGGAGCACAUCUUGACU
....(((((.((.(((...(((((..(((.(((((((((((....((((((((....))))))))))))))))))).)))))))).))).)))))))((((((......)))))).. ( -42.90)
>DroEre_CAF1 10266 117 - 1
CCGUUUCCUGAGAUGUACAAAUGCGACUCCGUGAUCAGGAGCAGGGAUGGUUCAAAGUUGCUCUUCUCCUGGUCACAAAUCCAUUGGCAGCUGGGAAUCAGGGAGCACAUCUUGACU
..(((((((((......((..((((....)(((((((((((.((((.(..(.....)..))))).)))))))))))..........)))..))....)))))))))........... ( -40.10)
>DroAna_CAF1 10189 117 - 1
CCCUUCCCUGAGAUGUAGAGAUGGGUGGCGGUGGUCAGGAGCAUGCAUGGCUCAAAGCUUUGUUGCUCCUGGCCACAAGUCCAUUGGCAGCGGGGUAGAAGAGCGCAUAUCUUUACU
.....(((((...(((...(((((((....(((((((((((((.(((.(((.....))).))))))))))))))))..))))))).))).)))))..(((((.......)))))... ( -51.60)
>consensus
CCAUUUCCUGAGAUGUACAAAUGUGUGUCCGUGAUCAGGAGCAGGCAGGGCUCAAAGCUGCGCUUCUCCUGGUCACAAAUCCAUUGGCAGCUGGGAAGCAGGGAGCACAUCUUGACU
....((((((((((((((....))))))).(((((((((((...((..(((.....)))..))..))))))))))).....................)).)))))............ (-18.09 = -19.15 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:08 2006