| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,947,217 – 5,947,330 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 5,947,217 – 5,947,330 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.15 |
| Mean single sequence MFE | -17.44 |
| Consensus MFE | -11.86 |
| Energy contribution | -11.81 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5947217 113 + 22407834 CAC-UG--AU-C-UUCUUUGC--UUGCAGAUUCCCCCUGUUCACGGCUAUUCACAAAAUAUGCACAAAUCAGCUCAAGCCUAAUGAUUUAAUUGAUUGCAUACGCAAUCACCCUGAGCAU ...-.(--((-(-(.(.....--..).))))).....((((((.((...................((((((((....))....))))))...(((((((....))))))))).)))))). ( -21.50) >DroVir_CAF1 3793 114 + 1 UGU-UU--AUAU-UUAUAUAC--UUGCAGAUUCCCAUUGUUCACCGCCAUACACAAAAUUUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU ...-..--....-........--.((((((((....((((............)))))))))))).......((((.........(((...)))((((((....)))))).....)))).. ( -17.30) >DroGri_CAF1 3158 108 + 1 ---------UAU-CAACUUAC--UUUCAGAUUCCCCCUAUUUACUGCCAUACACAAAAUUUGCACAAAUCAGCUUAAGCCUAAUGAUUUAAUCGAUUGCAUACGCAAUCAUCCUGAGCAU ---------...-........--.(((((....................................((((((((....))....))))))....((((((....))))))...)))))... ( -15.30) >DroWil_CAF1 4290 115 + 1 AAU-UA--AU-CAAUCGUUCC-UUUACAGAUUCCCCUUGUUCACGGCUAUACACAAAAUAUGCACAAAUCAGCUUAAACCUAAUGAUUUAAUCGAUUGCAUACGCAAUCAUCCAGAGCAU ...-..--..-.....((((.-......((((.............(((((.......))).))..((((((............))))))))))((((((....)))))).....)))).. ( -15.90) >DroMoj_CAF1 3570 107 + 1 ----------AU-UCAAUUUC--UUGCAGAUUCCCACUGUUCACAGCUAUACAUAAAAUUUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUUGAUUGCAUACGCAAUCAUCCCGAGCAU ----------.(-((....((--(((((((((....(((....)))..........)))))))........((....))...))))......(((((((....)))))))....)))... ( -16.04) >DroPer_CAF1 13022 118 + 1 GAUGUGUCUU-U-CUCUUCUCUUUUCUAGAUUCCCCCUGUUUACGGCCAUUCAUAAGAUAUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU ..(((((...-(-((....(((.....)))......(((....))).........)))...))))).....((((.........(((...)))((((((....)))))).....)))).. ( -18.60) >consensus _AU_U___AU_U_UUAUUUAC__UUGCAGAUUCCCCCUGUUCACGGCCAUACACAAAAUAUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU .....................................(((((.......................(((((..............)))))....((((((....)))))).....))))). (-11.86 = -11.81 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:06 2006