| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,942,987 – 5,943,107 |
| Length | 120 |
| Max. P | 0.926384 |
| Location | 5,942,987 – 5,943,107 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.44 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -16.44 |
| Energy contribution | -16.57 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.926384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5942987 120 + 22407834 AUUUUUAUAACGUUACGCACGGCAUCAUCAAGACUCUGUAAGCUUGCCGAUCCGGAUUUGAUCGUAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUUUACGACAUCGGUAAUU ................((((((..((.....))..))))..))((((((((..(((((((....))))))).((...(((((.(((........))))))))...))...)))))))).. ( -30.40) >DroSec_CAF1 5726 111 + 1 AAUUUCAUAACGUUAUUUACGGCUUUAUCAAGAC---------UUGCCGAUCCGGAUUUGAUCGCAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUGUACAACAUCGGUAAGU ..........(((.....)))...........((---------((((((((..(((((((....))))))).((...(((((.(((........))))))))...))...)))))))))) ( -34.20) >DroEre_CAF1 5787 120 + 1 AUUUUAAAACUGUUAGUCAUAGCGUCUUCAAGACCCUGCAUGGUUAACGAUCCAUGUUUGAUCAUAGAUCCAGCAUUGGAGAUAAACUUAUAAAGCUUAUUCUUCAUCACAUCGGAAAGU ..........(((((..(((.(((((.....)))...)))))..))))).((((((((.((((...)))).)))))(((((((((.((.....)).))).)))))).......))).... ( -24.60) >consensus AUUUUAAUAACGUUACUCACGGCAUCAUCAAGAC_CUG_A_G_UUGCCGAUCCGGAUUUGAUCGUAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUUUACAACAUCGGUAAGU ..........(((.....)))......................((((((((..(((((((....)))))))((((((((((.....))).))))))).............)))))))).. (-16.44 = -16.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:05 2006