Locus 220

Sequence ID 2L_DroMel_CAF1
Location 626,262 – 626,366
Length 104
Max. P 0.851486
window353

overview

Window 3

Location 626,262 – 626,366
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 93.27
Mean single sequence MFE -28.54
Consensus MFE -23.28
Energy contribution -24.04
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.82
SVM decision value 0.79
SVM RNA-class probability 0.851486
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 626262 104 + 22407834
UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCUCCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA
.....((((((..........((((.....))))..((((....(((((((.(((...)))(((((...))))).....))))))).......)))))))))). ( -31.60)
>DroSec_CAF1 15531 104 + 1
UCGUAUUGGGUCGAUUUAUCCAAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA
..(((((((...((((.....))))...(((....)))))))))).....(((((((((((....(((((......)))))...))))).....)))))).... ( -25.50)
>DroSim_CAF1 15082 104 + 1
UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA
..(((((((((.((....)).((((.....))))..))))))))).....(((((((((((....(((((......)))))...))))).....)))))).... ( -28.80)
>DroEre_CAF1 19176 104 + 1
UCGUAUUGGCUCGACGUAUCUGAUCUAACCGAUCAAGGCCAAUACAUAUCGUUGGUCUCCGGGCGCAAAGUACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA
..(((((((((.((....))(((((.....))))).))))))))).....(((((((((((....(((((......)))))...)))).....))))))).... ( -31.50)
>DroYak_CAF1 18136 104 + 1
UCGUAUUGGAUCGACGUAUCCGAUCUCACCGAUCAAGGCGAAUACAUCUCGUUGGUCUCCGGGAGCAAAGCACCAUUUUUAAAAUGGAACAAAGGCCAGCCAAA
..(((((((((((.......))))))(.((......)).)))))).....((((((((..(...((...)).(((((.....)))))..)..)))))))).... ( -25.30)
>consensus
UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA
..(((((((((.((....)).((((.....))))..))))))))).....(((((((((((....(((((......)))))...)))).....))))))).... (-23.28 = -24.04 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:25 2006