| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,938,435 – 5,938,529 |
| Length | 94 |
| Max. P | 0.938173 |
| Location | 5,938,435 – 5,938,529 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 90.78 |
| Mean single sequence MFE | -16.44 |
| Consensus MFE | -15.42 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5938435 94 - 22407834 CAGGUUGAAAUAACAUGGGGAAUUUUUAGAAAAGCGACGACAAAACGUCGAAUGAAAGAUAAAUAAAGAGUGCCGCCCAGGCAGUCAAAAC-GAA ...(((...............((((((.......(((((......)))))....)))))).......((.((((.....)))).))..)))-... ( -18.60) >DroSec_CAF1 1120 95 - 1 CAGGUUGAAAUAACAUGGGGAAUUUUUAGAAAAGCGAUGACAAAACGUCGAAUGAAAGAUAAAUAAAGAGUGCCGCCCAGGCAGUCAAAAAGGAA ((.((((...)))).))....((((((.......(((((......)))))....)))))).......((.((((.....)))).))......... ( -16.30) >DroSim_CAF1 1083 81 - 1 CAGU---GAAUAACAUGGGAA--UUUUAGA-AAGCGACGACAA-ACGUCG-AUGAAAGAUA-AUAAAGAGUGU--GCCAGGCAGUCAAAAG---A ....---..............--(((((..-...(((((....-.)))))-.)))))....-.....((.(((--.....))).)).....---. ( -11.10) >DroEre_CAF1 1153 94 - 1 CAGGUUGAAAUAACAUGGGGAAUUUUUAGAAAAGCGACGACAAAACGUCGAAUGAAAGAUAAAUAAAGAGUGCCGCCCAGGCAGUCAAAAA-GAA ((.((((...)))).))....((((((.......(((((......)))))....)))))).......((.((((.....)))).)).....-... ( -18.10) >DroYak_CAF1 878 94 - 1 CAGGUUGAAAUAACAUGGGGAAUUUUUAGAAAAGCGACGACAAAACGUCGAAUGAAAGAUAAAUAAAGAGUGCCGCCCAGGCAGUCAAAAA-GAA ((.((((...)))).))....((((((.......(((((......)))))....)))))).......((.((((.....)))).)).....-... ( -18.10) >consensus CAGGUUGAAAUAACAUGGGGAAUUUUUAGAAAAGCGACGACAAAACGUCGAAUGAAAGAUAAAUAAAGAGUGCCGCCCAGGCAGUCAAAAA_GAA ......................((((((......(((((......)))))..)))))).........((.((((.....)))).))......... (-15.42 = -15.50 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:59 2006