Locus 2196

Sequence ID 2L_DroMel_CAF1
Location 5,934,929 – 5,935,024
Length 95
Max. P 0.893212
window3537

overview

Window 7

Location 5,934,929 – 5,935,024
Length 95
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.25
Mean single sequence MFE -22.32
Consensus MFE -14.12
Energy contribution -13.98
Covariance contribution -0.13
Combinations/Pair 1.26
Mean z-score -1.91
Structure conservation index 0.63
SVM decision value 0.98
SVM RNA-class probability 0.893212
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5934929 95 + 22407834
UAAGUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGUGUUUCUGUGU-UUAA---GGA---AACA--AAAAAAAAAAGAAAAGUGAAGG---
...................---((((((((((.......)))))))).(((((...(((((...(-((..---(..---..).--.))).....))))).)))))))--- ( -22.00)
>DroPse_CAF1 25240 101 + 1
AA-UUGUAAUUUCUUUUUGUGCUCAUGGCAGCUAAUUUUGUUGCCUUUUUCACACGUUUCUUUGU-UUGCCACGCCCCCGAGGAAAUAAA-------CCAGGGCAGGGGC
..-............(((.(((((..((((((.......))))))..........(((((((((.-..((...))...)))))))))...-------...))))).))). ( -24.40)
>DroSec_CAF1 20843 90 + 1
UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU-UUAA---GGA---AACA--AAAAAAAG----AAAGUAAAGG---
..-(((((..(((((.(((---(....))))....(((((((.((((...((((......)))).-..))---)).---))))--)))..)))----))..))))).--- ( -21.50)
>DroSim_CAF1 20129 88 + 1
UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU-UUGA---GGA---AACA--AAAAAA------AAAGUGAAGG---
..-(((((..(((((.(((---(....))))....(((((((.((((...((((......)))).-..))---)).---))))--))))))------))..))))).--- ( -21.90)
>DroEre_CAF1 20827 85 + 1
UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUGCUGUGU-UUAA---GGA---AACA--AAAAA---------AUAGGAGA---
..-.........(((((((---(....))......(((((((.((((...(((((...)).))).-..))---)).---))))--)))..---------..))))))--- ( -20.60)
>DroYak_CAF1 20978 91 + 1
UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGUGUUAA---GGACAAAACAAAAAAAA---------AUAGGAGA---
..-......(((((((((.---..((((((((.......))))))))...((((((....))))))...)---))).)))))........---------........--- ( -23.50)
>consensus
UA_UUUUAAGUUUUUCCUG___CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU_UUAA___GGA___AACA__AAAAA_______AAAGUGAAGG___
.........(((..(((.......((((((((.......))))))))....(((((....)))))........)))...)))............................ (-14.12 = -13.98 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:55 2006