Locus 2193

Sequence ID 2L_DroMel_CAF1
Location 5,932,198 – 5,932,294
Length 96
Max. P 0.500000
window3534

overview

Window 4

Location 5,932,198 – 5,932,294
Length 96
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 96.62
Mean single sequence MFE -24.83
Consensus MFE -23.03
Energy contribution -23.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.93
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5932198 96 - 22407834
AAGGAGUGUG----UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA
.....(.(((----(...(((((((......)))...........((.((((.(..(((((..........)))))..).)))))))))))))))..... ( -21.40)
>DroSec_CAF1 18059 100 - 1
AAGGCGUGUGUAUGUAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA
..(((((((((.((......((((.....))))......))))))((.((((.(..(((((..........)))))..).))))))....)))))..... ( -26.60)
>DroSim_CAF1 17371 96 - 1
AAGGCGUGUG----UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA
..((((((((----((...((((((......))).....................((((((..........)))))))))...)))))..)))))..... ( -26.50)
>consensus
AAGGCGUGUG____UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA
..(((((...........(((((((......)))...........((.((((.(..(((((..........)))))..).)))))))))))))))..... (-23.03 = -23.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:52 2006