Locus 2192

Sequence ID 2L_DroMel_CAF1
Location 5,928,951 – 5,929,041
Length 90
Max. P 0.938851
window3533

overview

Window 3

Location 5,928,951 – 5,929,041
Length 90
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.89
Mean single sequence MFE -22.72
Consensus MFE -12.69
Energy contribution -12.72
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -2.32
Structure conservation index 0.56
SVM decision value 1.27
SVM RNA-class probability 0.938851
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5928951 90 - 22407834
GAGAAUGUUCCUCGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC--------AUUG--AGCUGUGUU-------
(((.......)))..........((((..((((.(((....((((((((((..........))))))))))))).))--------)).)--)))......------- ( -19.70)
>DroPse_CAF1 17710 92 - 1
------UUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGCAGCACAGCAUUG--AGCUGUGUA-------
------....(((((......)))))....(((.(((....((((((((((..........))))))))))))).)))(((((((....--.))))))).------- ( -28.80)
>DroWil_CAF1 19519 94 - 1
--AAACGUUGUCGGUUGUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGUUGC----CAUUGUCAGUUAAGUU-------
--.((((.(((..(((.(((...(((((((.(((((((...))).)))).)))))))..))))))..))).)))).....----................------- ( -17.80)
>DroMoj_CAF1 19566 88 - 1
--------CCGACGUUGUCAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC--------AUUG--AGUUGU-UGUUCGUUU
--------(((((((((..((((((......)).)))).))))))))).....((((..(((..(..(((....)))--------...)--..))).-.)))).... ( -20.80)
>DroAna_CAF1 15317 85 - 1
-----AGCUCAUCGCAAUAAUGUGUUUUUAUGCUACAUUUAAUUUUAGCUUAAGAGCUUUAAAGCUAGUAUUGUUGU--------AUUG--AGUGGUGAA-------
-----.(((((..(((((((((....((((.((((.(......).)))).))))((((....))))..)))))))))--------..))--)))......------- ( -20.40)
>DroPer_CAF1 17847 92 - 1
------UUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGCAGCACAGCAUUG--AGCUGUGUA-------
------....(((((......)))))....(((.(((....((((((((((..........))))))))))))).)))(((((((....--.))))))).------- ( -28.80)
>consensus
______GUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC________AUUG__AGCUGUGUA_______
...................((((((......)).)))).((((((((((((..........)))))))))))).................................. (-12.69 = -12.72 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:51 2006