| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,921,988 – 5,922,080 |
| Length | 92 |
| Max. P | 0.692715 |
| Location | 5,921,988 – 5,922,080 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -17.75 |
| Consensus MFE | -9.61 |
| Energy contribution | -11.00 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5921988 92 - 22407834 UUAAAUU--UUCCCUUUUUUCCUUGUGUAGUU--CAU---GUUUAAUUUAUGUGCAAUAGGA-UAUAUUGCUCUUAGAAGUCGUGACC-CACCUAAUACAU--- .......--..............(((((((.(--(((---(.....((((.(.((((((...-..)))))).).))))...)))))..-...)).))))).--- ( -12.60) >DroGri_CAF1 8410 100 - 1 UUUAGUUGUCUUCCG-UUUUAUUCGUAUAUUUUUGCUUCAGCUU--UUAAUUAGCAAUUUUU-CAUAUUGCUUUAACAAUUACGGAAUUCAUUAAUUACAUCAA .(((((.(..(((((-(...(((.((........((....))..--......((((((....-...))))))...))))).))))))..))))))......... ( -13.90) >DroSec_CAF1 7809 91 - 1 UUGAAUU--UUCCAU-AUUUCCUUGUGUAGUU--CAU---GUUUAAUUUAAGUGCAAUAGGA-UAUAUUGCUCUUAGAAGUCGUGACC-CACGUAAUACAU--- .((((((--...(((-(......)))).))))--)).---......((((((.((((((...-..)))))).))))))...((((...-))))........--- ( -18.30) >DroSim_CAF1 7285 91 - 1 UUGAAUU--UUCCAU-AUUUCCUUGUGUAGUU--CAU---GUUUAAUUUAAGUGCAAUAGGA-UAUAUUGCUCUUAGAAGUCGUGAAC-CACGUAAUACAU--- .......--......-......((((((.(((--(((---(.....((((((.((((((...-..)))))).))))))...)))))))-.)))))).....--- ( -21.20) >DroEre_CAF1 7757 91 - 1 UUAACUU--UUCCAU-UGUUCCUUGUGUAGUU--CGU---GUUA-UUUUAAGUGCAAUAGGAAAAUAUUGCUCUUAGAAGUCGUGACC-CACCUAAUACAU--- .......--......-(((.....(((....(--(((---(...-(((((((.((((((......)))))).)))))))..)))))..-))).....))).--- ( -17.30) >DroYak_CAF1 7778 91 - 1 UUAACUU--UUCCAA-UUUUCCUUGUGUAGUU--CAU---GUUAAAUUUAAGUGCAAUAAGA-AAUAUUGCUCUUAGAUGUCGUGACC-UACGUAAUACAU--- .......--......-......((((((((.(--(((---(....(((((((.((((((...-..)))))).)))))))..))))).)-))))))).....--- ( -23.20) >consensus UUAAAUU__UUCCAU_UUUUCCUUGUGUAGUU__CAU___GUUUAAUUUAAGUGCAAUAGGA_UAUAUUGCUCUUAGAAGUCGUGACC_CACGUAAUACAU___ ........................((((..................((((((.((((((......)))))).))))))....(((....)))...))))..... ( -9.61 = -11.00 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:50 2006