| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,917,329 – 5,917,449 |
| Length | 120 |
| Max. P | 0.815515 |
| Location | 5,917,329 – 5,917,449 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.34 |
| Mean single sequence MFE | -43.79 |
| Consensus MFE | -23.78 |
| Energy contribution | -23.62 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5917329 120 - 22407834 CCGCUUCCAGAGAACUCUGCUGUUGCAUCGCAUGGUGCUCCCCCGCCUCGGCCAGUAUGCGUGGCUGCUGCGGUCCGUGCAGUGCGUACGUCUUGCUAUCUAGACUGGAGGCCACCUUGU ..(((((((............(((((((.((((((.......((((..(((((((....).))))))..)))).)))))).))))).))((((........)))))))))))........ ( -44.90) >DroVir_CAF1 3402 117 - 1 CCGCCUCCAGUGAGGAUUGCUGCUGCAUGGCAUGCUGCUC---GGCUUCGGCCAAGAUGCGCGGCUGUUGCUGGCCAUGCAGAAAAUAGAUUUUGCUAUCCAAACUGGAGGCCACCUUAU ..(((((((((..((((.((..(((((((((..((..((.---(((....))).))..)).((((....)))))))))))))............)).))))..)))))))))........ ( -58.14) >DroGri_CAF1 3458 117 - 1 UGGCUUCCAGUGAGGAUUGCUGUUGCAUCGAAUGCUGCUC---CGCUUCGGCGAGAAUUCGCGGCUGCUGUUGGCCAUGCAGAAAGUAGACUUUGCUAUCCAAACUGGAUGCCACCUUGU ((((.((((((..((((.((..(((((((((((....(((---.((....))))).))))).((((......))))))))))((((....)))))).))))..)))))).))))...... ( -47.70) >DroWil_CAF1 3169 117 - 1 CUGCCUCCAAAGAGCUUUGCUGUUGUAUGGAA---UGCUCUCCGGCAUCGGCCAGUAUUCGUGGUUGUUGCGGACCAUGUUGAAAAUAGGUUUUACUAUCCAAACUUGAGGCCACUUUGU .((((.....(((((.((.(........).))---.)))))..))))..((((......(((((((......))))))).......(((((((........))))))).))))....... ( -31.20) >DroMoj_CAF1 3579 117 - 1 UCGCCUCCAGCGACGAUUGCUGCUGUAUCAAAUGCUGCUC---GGCCUCUGCCAAGAUUCGGGGCUGUUGCUGCCCAUGCAGAAAGUAUAAUUUGCUAUCCAGGCUGGAGGCCACCUUGU ..(((((((((...(((.((...(((((......((((..---(((....)))........((((.......))))..))))...)))))....)).)))...)))))))))........ ( -41.80) >DroAna_CAF1 3149 117 - 1 CUGCCUCCAAAGAACUCUGCUGCUGUACGGA---GUGCUGUUCUGCCUCGGCCAAGAUGCGUGGUUGCUGCUGCCCGUGUAAGGCGUAUGUCUUGCUGUCCAGACUGGAGGCCACUUUGU ..(((((((.((.((((((........))))---)).))..((((...((((.((((((((....)))(((.(((.......)))))).)))))))))..)))).)))))))........ ( -39.00) >consensus CCGCCUCCAGAGAGCAUUGCUGCUGCAUCGAAUGCUGCUC___GGCCUCGGCCAAGAUGCGUGGCUGCUGCUGCCCAUGCAGAAAGUAGAUUUUGCUAUCCAAACUGGAGGCCACCUUGU ..((((((((........(((((.(((........))).....(((....))).......))))).............((((((......))))))........))))))))........ (-23.78 = -23.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:49 2006