Locus 2181

Sequence ID 2L_DroMel_CAF1
Location 5,897,918 – 5,898,013
Length 95
Max. P 0.874651
window3519

overview

Window 9

Location 5,897,918 – 5,898,013
Length 95
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 90.45
Mean single sequence MFE -37.67
Consensus MFE -30.04
Energy contribution -30.66
Covariance contribution 0.62
Combinations/Pair 1.08
Mean z-score -2.10
Structure conservation index 0.80
SVM decision value 0.89
SVM RNA-class probability 0.874651
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5897918 95 + 22407834
CGGCAUUUGGACUGC--CACAAUGGCCCCCAGAUGCUGCCACCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACUGGCAUAGA
.(.(((((((.((((--......(((.((.(((((((.(((((....)))))..))))))).))...)))........))))))))).)).)..... ( -38.64)
>DroSec_CAF1 87674 95 + 1
CCUGAGUUGGACUGC--CACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACAGGCAUAGA
((((..((((.((((--......(((.((.(((((((.(((((....)))))..))))))).))...)))........)))))))).))))...... ( -39.34)
>DroSim_CAF1 88921 97 + 1
CCUGAGUUGGACUGCCCCACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGCAAAAGCAGCCAAACUGGCAUAGA
.(((.(((((.(((((((.....)).....(((((((.(((((....)))))..))))))).)))).).))))).......(((.....))).))). ( -37.00)
>DroYak_CAF1 113695 95 + 1
CGGCAGUUGCACUGC--CACAAUGGCCCCCAGUUGAUGCCGCCACGAGGUGGGAGGCGUCGCGGCACGCCCAGCAAAAGCAGCCAAACUGGCUCAGA
.(((((.....))))--)....(((...((((((((((((.((((...))))..))))))..(((..((.........)).))).)))))).))).. ( -35.70)
>consensus
CCGCAGUUGGACUGC__CACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACUGGCAUAGA
......((((.((((........(((.((.(((((((.(((((....)))))..))))))).))...)))........))))))))........... (-30.04 = -30.66 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006