Locus 2178

Sequence ID 2L_DroMel_CAF1
Location 5,893,741 – 5,893,836
Length 95
Max. P 0.535278
window3516

overview

Window 6

Location 5,893,741 – 5,893,836
Length 95
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 78.34
Mean single sequence MFE -24.70
Consensus MFE -12.56
Energy contribution -13.36
Covariance contribution 0.80
Combinations/Pair 1.30
Mean z-score -1.83
Structure conservation index 0.51
SVM decision value 0.00
SVM RNA-class probability 0.535278
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5893741 95 - 22407834
UAAGUUGACUUAUGCAUUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAGCUGCGAUAGUGA----GCAACA
...((((.(((((......((((((........(((((((....------..)))))))..(((..((......))..))).))).)))..))))----))))). ( -25.90)
>DroSec_CAF1 83593 95 - 1
UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAACUGCGAUGGUGA----GCACCA
(((((..(((((........)))))..))))).(((((((....------..))))))).((((((((..(..((((.....))))..).))).)----)))).. ( -24.80)
>DroSim_CAF1 84699 95 - 1
UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUGCAGUGGCAAAUUGCGAUGGUGA----GCACCA
(((((..(((((........)))))..))))).(((((((....------..))))))).((((((((..(((((((.....))))))).))).)----)))).. ( -27.70)
>DroEre_CAF1 109340 94 - 1
UAAGUUCGCCUAUGCAAUCUUAGCCACUUUUAAAAACAAGUAUU-------UUUUGUUUAGUGCUGCAUUUUGCAGUGGCCAACUGUAUAG----GAAUCCAGCA
...(((..((((((((......(((........(((((((....-------.)))))))...(((((.....))))))))....)))))))----).....))). ( -25.00)
>DroYak_CAF1 109478 104 - 1
UAAGUUCACUUAUGAAAUUUUGAGCACUUUUAAAAACGAGUAUUUCUGUAUUUUUGUUUAGUGGUGCUUUUUACAGUGGCAAACUGUCAAGCUUUGAAGCCAGC-
((((....))))(((......(((((((.(((((...((((((....))))))...))))).)))))))....((((.....))))))).(((....)))....- ( -20.10)
>consensus
UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC______UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAACUGCGAUGGUGA____GCACCA
((((....))))(((......(((((((((...(((((((............))))))))))).))))).(((((((.....)))))))..........)))... (-12.56 = -13.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:32 2006