Locus 2175

Sequence ID 2L_DroMel_CAF1
Location 5,881,077 – 5,881,167
Length 90
Max. P 0.880700
window3512

overview

Window 2

Location 5,881,077 – 5,881,167
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 89.52
Mean single sequence MFE -25.95
Consensus MFE -21.88
Energy contribution -21.88
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -2.25
Structure conservation index 0.84
SVM decision value 0.91
SVM RNA-class probability 0.880700
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5881077 90 + 22407834
GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCAGCCCAG
..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70)
>DroSec_CAF1 71033 90 + 1
GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG
..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70)
>DroSim_CAF1 71861 90 + 1
GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG
..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70)
>DroEre_CAF1 94922 89 + 1
GUUAAAUAUUUGUGGAGCA---CGGUGUGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCG-CCCAG
............(((.((.---.((((((..(((....)))............(((((((((((....))))))))))).)))))))-)))). ( -32.10)
>DroWil_CAF1 141334 92 + 1
GUUAAAUAUUUGUUAAGAAUGA-GAAAUGGAAAUGAAAAUUGUAUCAUAGCACGCUUUUCACAUGAGCGUGUGAAAGGCACACAUAGACCCAU
......(((((.....))))).-...((((..((((........)))).....(((((((((((....)))))))))))..........)))) ( -19.70)
>DroYak_CAF1 96628 90 + 1
GUUAAAUAUUUGUGUAGCA---CUGUGUGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG
..........(((((....---(((((....(((....)))....)))))...(((((((((((....))))))))))))))))......... ( -26.80)
>consensus
GUUAAAUAUUUGUGCAGCA___CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG
..........((((..........((((....((((........)))).))))(((((((((((....))))))))))).))))......... (-21.88 = -21.88 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006