Locus 2174

Sequence ID 2L_DroMel_CAF1
Location 5,872,690 – 5,872,782
Length 92
Max. P 0.925635
window3511

overview

Window 1

Location 5,872,690 – 5,872,782
Length 92
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 68.19
Mean single sequence MFE -15.76
Consensus MFE -9.00
Energy contribution -8.92
Covariance contribution -0.08
Combinations/Pair 1.20
Mean z-score -1.78
Structure conservation index 0.57
SVM decision value 1.17
SVM RNA-class probability 0.925635
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5872690 92 - 22407834
AUCAAGAUGAUCUCUAUGAUCGUUUUGCCACUAUAAGCUUUUGGUAUGUCA-----UAUGAAAUCAGUUUGGUAUCA--UACAACUUCAAUUCGU-------UGCC
..((((((((((.....))))))))))........(((..((((...((..-----(((((.(((.....))).)))--))..)).))))...))-------)... ( -18.70)
>DroSec_CAF1 62662 97 - 1
GUUAAGAUGAGCUCUAUGAUCGUUUUGCUACUAUCAGCUUUUGGUAUAUCAUAUCAUAUCAAAUCAGUUUGGUAUCA--UACAACUUGAAUACGA-------UACC
..((((((((.(.....).))))))))....((((....((((((((........))))))))((((.(((......--..))).))))....))-------)).. ( -14.80)
>DroSim_CAF1 63516 85 - 1
AUUAAGAUGAUCUCUAUGAUCAUUUUGCUACAAUCAGCUUUUGGU------------AUCAAAUUAGUUUGUUAUCA--CACAACUUGAAUACGA-------UACC
...(((((((((.....)))))))))(((......)))....(((------------(((...((((.((((.....--.)))).))))....))-------)))) ( -18.30)
>DroEre_CAF1 86706 95 - 1
-CCCAGAUGAUCUCGAUGAUCAUUUUGCUACUAUCAGCUUUUGGCAUAUCAU----------AUCAGUUUGCAAUCAGCUCUAACUUUAUUAGCACUCCAUUCACU
-...((((((((.....))))))))(((((.((..((((....(((...(..----------....)..)))....)))).......)).)))))........... ( -16.10)
>DroYak_CAF1 88027 90 - 1
-UCAAGAUGAUCUCUAUGAUCAUUUUGCUACUAUCAGCUUUUUAUAUACCAUAUCU--CCAUAUCAGUUUGAAA----------CUU--UUAACA-UCCAUUUACU
-.((((((((((.....)))))))))).............................--................----------...--......-.......... ( -10.90)
>consensus
_UCAAGAUGAUCUCUAUGAUCAUUUUGCUACUAUCAGCUUUUGGUAUAUCAU_____AUCAAAUCAGUUUGGUAUCA__UACAACUUGAAUACGA_______UACC
..((((((((((.....))))))))))............................................................................... ( -9.00 =  -8.92 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:27 2006