| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,863,985 – 5,864,086 |
| Length | 101 |
| Max. P | 0.961673 |
| Location | 5,863,985 – 5,864,086 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 73.56 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -12.73 |
| Energy contribution | -13.22 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5863985 101 - 22407834 UUAGAUAUGGAUACGUGAGUAUCCACUUUCACCGAUUGCUUUCUGCUUAAAGCCCAAAAAACACGAUCCAUAU---AUGA----AUGCAAUAUCAUUUAAGGCAGUUC ...((..(((((((....)))))))...))...((((((((...((.....))....................---.(((----(((......)))))))))))))). ( -22.40) >DroSec_CAF1 53979 76 - 1 UUAGAUAUGGAUACGUGAGUAUCCACUUUCACCGAUUGCUUU-------------------------CCAUAU---AUGA----AUGCAAUAUCAUUUAAGGCAGGUG .......(((((((....)))))))....((((...((((((-------------------------......---((((----........))))..)))))))))) ( -20.70) >DroSim_CAF1 54744 100 - 1 UUAGAUAUGGAUACGUGAGUAUCCACUUUCACCGAUUGCUUUCUGCUUUAAGCAG-AACAACACGAUCCAUAU---AUGA----AUGCAAUAUCAUUUAAGGCAGGUC ...((..(((((((....)))))))...))((((((((..((((((.....))))-)).....))))).....---.(((----(((......)))))).....))). ( -28.00) >DroYak_CAF1 79146 96 - 1 UUAGAUAUGGAUACGUGAGUCGCCACA-----------AUUUCUGCUUUAAACCC-AACAUCACGAUCCAUAUGAUAUGAUGAUGUGCAAUAUCAUUUAAGGCUGGUC ((((((((((((.(((((.........-----------.................-....))))))))))))).....((((((((...)))))))).....)))).. ( -18.51) >consensus UUAGAUAUGGAUACGUGAGUAUCCACUUUCACCGAUUGCUUUCUGCUUUAAGCCC_AACAACACGAUCCAUAU___AUGA____AUGCAAUAUCAUUUAAGGCAGGUC ...(((((((((((....))))))............................................(((.....)))..........))))).............. (-12.73 = -13.22 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:20 2006