Locus 2168

Sequence ID 2L_DroMel_CAF1
Location 5,851,456 – 5,851,550
Length 94
Max. P 0.748784
window3500

overview

Window 0

Location 5,851,456 – 5,851,550
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 86.35
Mean single sequence MFE -35.95
Consensus MFE -30.16
Energy contribution -31.27
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.84
SVM decision value 0.47
SVM RNA-class probability 0.748784
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5851456 94 + 22407834
GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG--
....-.....(((...)))((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....))))))))))..-- ( -37.80)
>DroPse_CAF1 123710 86 + 1
--------UGUGC-UCUCAGGUGCUGUACAGCAAAAUUGCCAUCGCCCUGUGGCGCAGCUCCCGAGGACUGACACCGCAUGUGGUUCAGCAGCAA--
--------..(((-((((.((.(((((...(((....)))....(((....)))))))).)).)))(.((((.((((....))))))))))))).-- ( -31.40)
>DroSec_CAF1 41454 94 + 1
GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG--
....-.....(((...)))((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....))))))))))..-- ( -37.80)
>DroSim_CAF1 41482 96 + 1
GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAGCA
....-..........(((.((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....)))))))))).))) ( -39.70)
>DroYak_CAF1 66454 96 + 1
GAACCCCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCACGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAGC-
................((.((((((((((.(((....((((((......))))))........(((((.....))))).))).)))))))))).))- ( -37.60)
>DroPer_CAF1 123082 86 + 1
--------UGUGC-UCUCAGGUGCUGUACAGCAAAAUUGCCAUCGCCCUGUGGCGCAGCUCCCGAGGACUGACACCGCAUGUGGUUCAGCAGCAG--
--------..(((-((((.((.(((((...(((....)))....(((....)))))))).)).)))(.((((.((((....))))))))))))).-- ( -31.40)
>consensus
GAAC_CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG__
...................((((((((((.(((....((((((......))))))........(((((.....))))).))).)))))))))).... (-30.16 = -31.27 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:17 2006