Locus 2167

Sequence ID 2L_DroMel_CAF1
Location 5,844,770 – 5,844,867
Length 97
Max. P 0.917274
window3499

overview

Window 9

Location 5,844,770 – 5,844,867
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 73.73
Mean single sequence MFE -19.03
Consensus MFE -12.09
Energy contribution -12.82
Covariance contribution 0.72
Combinations/Pair 1.23
Mean z-score -1.62
Structure conservation index 0.64
SVM decision value 1.11
SVM RNA-class probability 0.917274
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5844770 97 + 22407834
UCUUCUUAUUUUUUUUUUGAC-UAG-UGCCUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC
...............((((.(-(((-((((........))))))))))))...((((((((((((.((.((((......)))))).)))))))))))). ( -24.30)
>DroPse_CAF1 113892 80 + 1
CC----------UUUUUAGAC-GCGUUGCGUGCGU----GUGUCUGCCGACAAAUGUUUUAAUUAUGCUCAUUAUUAAA----GCUUAAUUAAAAAGUC
.(----------(((((((((-((((.....))))----))(((....)))....((((((((.((....)).))))))----))....)))))))).. ( -17.30)
>DroSec_CAF1 34841 79 + 1
CCCUCCUUUUCUUUUUUUGAC-UAG-UG------------------CAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC
..(((((..((.......)).-.))-.)------------------.))....((((((((((((.((.((((......)))))).)))))))))))). ( -10.80)
>DroSim_CAF1 34843 79 + 1
CCCUCCUUUUCUUUUUUUGAC-UAG-UG------------------CAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC
..(((((..((.......)).-.))-.)------------------.))....((((((((((((.((.((((......)))))).)))))))))))). ( -10.80)
>DroEre_CAF1 58849 92 + 1
U------GUUCUUUUUUUGGCCAAG-UGCUUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUGCGCUAUUAAAGGCGGCUUAAUUAAAAUGUC
.------............(((((.-((((........)))))))))......((((((((((((.((.((((......)))))).)))))))))))). ( -24.20)
>DroYak_CAF1 59494 88 + 1
U---------CCUUUUUUGAC-UAC-UGCCUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGCUAUUAAAGGCGGCUUAAUUAAAAUGUC
.---------........(((-..(-((((.((((....)))).)))))......((((((((((.((.((((......)))))).))))))))))))) ( -26.80)
>consensus
CC______UUCUUUUUUUGAC_UAG_UGC_UGUGU____GCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC
..........................((((.((((....)))).)))).....((((((((((((.((.((((......)))))).)))))))))))). (-12.09 = -12.82 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:16 2006