Locus 2161

Sequence ID 2L_DroMel_CAF1
Location 5,821,991 – 5,822,081
Length 90
Max. P 0.912781
window3491

overview

Window 1

Location 5,821,991 – 5,822,081
Length 90
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 82.84
Mean single sequence MFE -21.10
Consensus MFE -14.24
Energy contribution -16.77
Covariance contribution 2.53
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.67
SVM decision value 1.09
SVM RNA-class probability 0.912781
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5821991 90 - 22407834
GAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUG-----------CCUCUUAUUCUAAGGCCAAGGAAACUAUUCUUUUGAAGCAAUAAAUUUAAG
((((((((((.(((((...(((........)))...)))-----------)).......)))))))..((....)).)))..(((((........))))). ( -16.50)
>DroSec_CAF1 20953 98 - 1
GAAGCCCU---GGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUCUUAUUCUAGGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG
.......(---(((........................(((((......)))))...(((.((((((.((....)).)))))).))))))).......... ( -23.80)
>DroSim_CAF1 20199 95 - 1
AAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUC------UAAGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG
.........(((((........................(((((......)))))------.((((((.((....)).))))))....)))))......... ( -23.00)
>consensus
GAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUCUUAUUCUAAGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG
...(((.....))).............((((((.....(((((......)))))...(((.((((((.((....)).)))))).)))......)))))).. (-14.24 = -16.77 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:09 2006