Locus 2158

Sequence ID 2L_DroMel_CAF1
Location 5,813,075 – 5,813,195
Length 120
Max. P 0.943344
window3488

overview

Window 8

Location 5,813,075 – 5,813,195
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.00
Mean single sequence MFE -37.85
Consensus MFE -35.93
Energy contribution -36.33
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.95
SVM decision value 1.33
SVM RNA-class probability 0.943344
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5813075 120 - 22407834
UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU
....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61)
>DroSec_CAF1 12209 120 - 1
UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU
....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61)
>DroSim_CAF1 11323 120 - 1
UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU
....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61)
>DroEre_CAF1 36157 120 - 1
UUGAAUUUCGUGAGCAAAAUGCCAAGCGAAACGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAG
....(((((((((((.....(((........((((........))))..........((....)).....)))......)))))))))))...(((.......)))..(((....))).. ( -38.80)
>DroYak_CAF1 36369 120 - 1
UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU
....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61)
>consensus
UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU
....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... (-35.93 = -36.33 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006