Locus 2155

Sequence ID 2L_DroMel_CAF1
Location 5,803,409 – 5,803,513
Length 104
Max. P 0.500000
window3485

overview

Window 5

Location 5,803,409 – 5,803,513
Length 104
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 61.74
Mean single sequence MFE -36.56
Consensus MFE -18.89
Energy contribution -19.58
Covariance contribution 0.69
Combinations/Pair 1.61
Mean z-score -1.32
Structure conservation index 0.52
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5803409 104 - 22407834
CGGAACCGAUGCCGAUAC----CUGUGCGGGCACCGGCGCUGG---CAUGCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACCG
(((.......((.(((((----(.(((.((.(((..((((..(---(......-------..))..))))..))).)).)))....))))))...))..((((....))))....))) ( -32.60)
>DroGri_CAF1 2176 103 - 1
-----CUGCU---GGUGGCAACAACCGAGGGCGGUUGCAUGCUCGCAGCACCAUUGCUGU-------UGUUGGUGGCAACACUGAUUGUGUUGUUGGUGCUGUUGAUGUAUGCCACGG
-----.....---.(((((..((((((....)))))).(((((((((((((((..((...-------.((..(((....)))..))...))...)))))))).))).))))))))).. ( -47.20)
>DroSec_CAF1 2620 104 - 1
CGGAACCGGUGCUGAUAC----CUGUGCGGGCACCGGCGCUGG---CAUUCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACCG
(((...((((..((((((----(.(((.((.(((..((((..(---(......-------..))..))))..))).)).)))....)))))))..))))((((....))))....))) ( -37.20)
>DroSim_CAF1 2629 104 - 1
CGGAACCGGUGCUGAUAC----CUGUGCGGGUACCGGCGCUGG---CAUGCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACAG
((((.(((((((((.(((----((....))))).)))))))))---......)-------)))........(((((((.....((((((((....)).))))))......))))))). ( -38.40)
>DroWil_CAF1 2948 83 - 1
CGCAACGGACGGUAAU-------UG----ACCACCGCCGCCG------------------------CCAUUGGUGGCAACUGAAAUGGUAUUAUUCGUACUAUUUAUAUAGGCGACAG
(((...((.((((...-------..----...))))))((((------------------------((...))))))..((((((((((((.....)))))))))...)))))).... ( -27.40)
>consensus
CGGAACCGAUGCUGAUAC____CUGUGCGGGCACCGGCGCUGG___CAUGCCU_______CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACAG
(((..((((((((..(((......)))..))))))))..)))..............................((((((....((((((((.......)))))))).....)))))).. (-18.89 = -19.58 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:03 2006