| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,799,332 – 5,799,430 |
| Length | 98 |
| Max. P | 0.669560 |
| Location | 5,799,332 – 5,799,430 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 68.09 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.04 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5799332 98 + 22407834 GUUGUUGCUGUCGCCUCGCUAUGCUUUG----CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC---UGGGCAAAAGCAACAACUGCAACAAAA-CAGUAAAA-------- (((((((((...((((.((...((....----....)).(.((.(((((.......))))).)))))---.))))...)))))))))..........-........-------- ( -28.90) >DroSec_CAF1 36569 96 + 1 GUUGUUGCUGUCGCCUCGCUUUG---------CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC---UGGGCAAAAGCAACAACUGCAACAAAG-CAGUAAAA-----AAA ..(((((((...((((.((...(---------((((......(((((.....)))))...)))))))---.))))...)))))))(((((......)-))))....-----... ( -30.10) >DroAna_CAF1 23306 108 + 1 GUUGUUUUU------UUAUUGUGUUUUGUGUCUUCUGCUGACCGUUUUCUAUGAAUGGAAGAGACGAGAGCAGGCGAUAAAAUCAAAUGCAACAAAAACAAGAGACAAACAACA (((((((.(------((.((((.((((((((((.((.....((((((.....)))))).))))))....(((...(((...)))...))).)))))))))).))).))))))). ( -26.70) >consensus GUUGUUGCUGUCGCCUCGCUAUG_UUUG____CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC___UGGGCAAAAGCAACAACUGCAACAAAA_CAGUAAAA_____A_A (((((((((...((((((((.................((...(((((.....)))))..)).)))).....))))...)))))))))........................... (-12.81 = -13.04 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:01 2006