Locus 2150

Sequence ID 2L_DroMel_CAF1
Location 5,794,978 – 5,795,097
Length 119
Max. P 0.938283
window3477

overview

Window 7

Location 5,794,978 – 5,795,097
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -40.20
Consensus MFE -39.34
Energy contribution -39.57
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.98
SVM decision value 1.29
SVM RNA-class probability 0.938283
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5794978 119 + 22407834
UUCACUUAACA-GGAAUCCAAGCCGAGUUAAGGCACAGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA
.(((((((...-(((((((..(((.......)))..(((((((.....((((.....))))....)))))))........)))))))((.(((((...))))).))...))))))).... ( -39.80)
>DroSec_CAF1 32051 118 + 1
UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGC--AGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGUUCACGAGUCGGAUUCUUAGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA
.(((((((...((((((((..(((.......)))--.(((..(.....((((.....)))).((...)))..))).....))))))))..(((((...)))))......))))))).... ( -36.90)
>DroSim_CAF1 34580 120 + 1
UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGCACAGUGUUCAAAUCCCAUCAAAGGUGAUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA
.(((((((.((((((((((..(((.......)))..(((((((..(((((......)).)))...)))))))........))))))))))(((((...)))))......))))))).... ( -43.90)
>consensus
UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGCACAGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA
.(((((((.((((((((((..(((.......)))..(((((((..(((((......)).)))...)))))))........))))))))))(((((...)))))......))))))).... (-39.34 = -39.57 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:55 2006